Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.wax ester synthase and diacylglycerol acyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 1 CH_aar_112 3 4 0.0000109835
Aethionema arabicum LG-4 1 CH_aar_64 4 7 0.0000000394333
Acer truncatum chr10 1 CH_acertr_527 2 3 0.000634436
Arabidopsis lyrata scaffold_5 1 CH_aly_162 3 3 0.00000143772
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 1 CH_amhyb_231 2 2 0.000505051
Arabidopsis thaliana Chr3 1 CH_ath_139 3 3 0.000000147742
Brassica carinata ChrB03 1 CH_bca_402 4 15 0.00000294292
Brassica carinata ChrB05 1 CH_bca_677 3 6 0.000115546
Brassica oleracea C3 1 CH_bol_196 3 6 0.0000108936
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_176 2 2 0.0000827917
Cannabis sativa NC_044371.1 1 CH_cansat_32 5 7 0.0000000000000614927
Capsicum annuum PGAv.1.6.scaffold1415 1 CH_can_71 4 5 0.000000000126851
Carya illinoinensis Chr06 1 CH_cil_228 3 4 0.000000230502
Chenopodium quinoa C_Quinoa_Scaffold_3107 1 CH_cqu_609 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_4250 1 CH_cqu_610 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_1606 1 CH_cqu_611 2 2 0.000995025
Capsella rubella scaffold_5 1 CH_cru_190 3 3 0.00000229346
Capsella rubella scaffold_4 1 CH_cru_191 3 3 0.00000229346
Capsella rubella scaffold_2 1 CH_cru_225 3 5 0.0000229204
Daucus carota DCARv2_Chr3 1 CH_dca_425 2 2 0.000637775
Daucus carota DCARv2_Chr4 1 CH_dca_426 2 2 0.000637775
Davidia involucrata GWHABJS00000020 1 CH_din_334 2 2 0.000150038
Durio zibethinus NW_019167893.1 1 CH_dzi_281 2 2 0.000278093
Erythranthe guttata scaffold_6 1 CH_egut_455 2 3 0.000655292
Eutrema salsugineum scaffold_9 1 CH_esa_123 3 4 0.0000057395
Eutrema salsugineum scaffold_2 1 CH_esa_52 4 4 0.000000000437212
Gossypium raimondii Chr01 1 CH_gra_349 2 2 0.000321664
Helianthus annuus HanXRQChr12 1 CH_han_235 3 3 0.000000125437
Lonicera japonica GWHAAZE00000003 1 CH_lonja_226 3 4 0.000000430351
Lonicera japonica GWHAAZE00000007 1 CH_lonja_634 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_552 2 3 0.000925157
Manihot esculenta Chromosome18 1 CH_mes_360 2 2 0.000183189
Oryza sativa ssp. japonica chr01 1 CH_osa_310 2 2 0.000316874
Papaver somniferum NC_039364.1 1 CH_pso_515 2 2 0.000202706
Populus trichocarpa Chr19 1 CH_ptr_372 2 2 0.0001734
Salix brachista GWHAAZH00000019 1 CH_sbr_282 2 2 0.000189042
Sequoiadendron giganteum chr3 1 CH_sgi_595 3 4 0.00000119594
Schrenkiella parvula ch5-1 1 CH_spa_121 3 3 0.00000204576
Schrenkiella parvula ch5-6 1 CH_spa_122 3 3 0.00000204576
Solanum pennellii Spenn-ch01 1 CH_spe_479 2 2 0.00044479
Tripterygium wilfordii NC_052249.1 1 CH_twi_173 2 2 0.0000557507
Utricularia gibba unitig_748 1 CH_ugi_80 3 3 0.00000133562
Utricularia gibba unitig_37 1 CH_ugi_92 3 4 0.00000534111
Vitis vinifera chr15 1 CH_vvi_48 6 16 0.00000000000000321018
Aethionema arabicum LG-3 2 CH_aar_112 3 4 0.0000109835
Aethionema arabicum LG-4 2 CH_aar_64 4 7 0.0000000394333
Acer truncatum chr10 2 CH_acertr_527 2 3 0.000634436
Arabidopsis lyrata scaffold_5 2 CH_aly_162 3 3 0.00000143772
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 2 CH_amhyb_231 2 2 0.000505051
Arabidopsis thaliana Chr3 2 CH_ath_139 3 3 0.000000147742
Brassica carinata ChrB03 2 CH_bca_402 4 15 0.00000294292
Brassica carinata ChrB05 2 CH_bca_677 3 6 0.000115546
Brassica oleracea C3 2 CH_bol_196 3 6 0.0000108936
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_176 2 2 0.0000827917
Cannabis sativa NC_044371.1 2 CH_cansat_32 5 7 0.0000000000000614927
Capsicum annuum PGAv.1.6.scaffold1415 2 CH_can_71 4 5 0.000000000126851
Carya illinoinensis Chr06 2 CH_cil_228 3 4 0.000000230502
Chenopodium quinoa C_Quinoa_Scaffold_3107 2 CH_cqu_609 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_4250 2 CH_cqu_610 2 2 0.000995025
Chenopodium quinoa C_Quinoa_Scaffold_1606 2 CH_cqu_611 2 2 0.000995025
Capsella rubella scaffold_5 2 CH_cru_190 3 3 0.00000229346
Capsella rubella scaffold_4 2 CH_cru_191 3 3 0.00000229346
Capsella rubella scaffold_2 2 CH_cru_225 3 5 0.0000229204
Daucus carota DCARv2_Chr3 2 CH_dca_425 2 2 0.000637775
Daucus carota DCARv2_Chr4 2 CH_dca_426 2 2 0.000637775
Davidia involucrata GWHABJS00000020 2 CH_din_334 2 2 0.000150038
Durio zibethinus NW_019167893.1 2 CH_dzi_281 2 2 0.000278093
Erythranthe guttata scaffold_6 2 CH_egut_455 2 3 0.000655292
Eutrema salsugineum scaffold_9 2 CH_esa_123 3 4 0.0000057395
Eutrema salsugineum scaffold_2 2 CH_esa_52 4 4 0.000000000437212
Gossypium hirsutum A07 2 CH_ghi_892 2 2 0.000961256
Gossypium hirsutum D07 2 CH_ghi_893 2 2 0.000961256
Gossypium raimondii Chr01 2 CH_gra_349 2 2 0.000321664
Helianthus annuus HanXRQChr12 2 CH_han_235 3 3 0.000000125437
Lonicera japonica GWHAAZE00000003 2 CH_lonja_226 3 4 0.000000430351
Lonicera japonica GWHAAZE00000007 2 CH_lonja_634 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_552 2 3 0.000925157
Manihot esculenta Chromosome18 2 CH_mes_360 2 2 0.000183189
Oryza sativa ssp. japonica chr01 2 CH_osa_310 2 2 0.000316874
Papaver somniferum NC_039364.1 2 CH_pso_515 2 2 0.000202706
Populus trichocarpa Chr19 2 CH_ptr_372 2 2 0.0001734
Salix brachista GWHAAZH00000019 2 CH_sbr_282 2 2 0.000189042
Sequoiadendron giganteum chr3 2 CH_sgi_595 3 4 0.00000119594
Schrenkiella parvula ch5-1 2 CH_spa_121 3 3 0.00000204576
Schrenkiella parvula ch5-6 2 CH_spa_122 3 3 0.00000204576
Solanum pennellii Spenn-ch01 2 CH_spe_479 2 2 0.00044479
Tripterygium wilfordii NC_052249.1 2 CH_twi_173 2 2 0.0000557507
Utricularia gibba unitig_748 2 CH_ugi_80 3 3 0.00000133562
Utricularia gibba unitig_37 2 CH_ugi_92 3 4 0.00000534111
Vitis vinifera chr15 2 CH_vvi_48 6 16 0.00000000000000321018

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001