Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.expansin activities.alpha-class expansin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 1 CH_aag_5 7 18 5.3566e-18
Arabidopsis lyrata scaffold_7 1 CH_aly_82 4 4 0.00000000916755
Avicennia marina ScioBoG_25048_HRSCAF_25167 1 CH_ama_42 3 3 0.0000171737
Arabidopsis thaliana Chr5 1 CH_ath_22 6 12 0.0000000000000709662
Brassica carinata ChrC01 1 CH_bca_645 3 3 0.0000677004
Camellia sinensis var. sinensis Chr7 1 CH_camsi_163 5 9 0.000000000839652
Cardamine hirsuta Chr8 1 CH_chi_97 4 4 0.0000000173885
Chenopodium quinoa C_Quinoa_Scaffold_1971 1 CH_cqu_317 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_1817 1 CH_cqu_318 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_3631 1 CH_cqu_319 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_3489 1 CH_cqu_320 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_1280 1 CH_cqu_321 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_1516 1 CH_cqu_517 3 5 0.000658932
Chenopodium quinoa C_Quinoa_Scaffold_2048 1 CH_cqu_68 5 5 0.0000000000801057
Chenopodium quinoa C_Quinoa_Scaffold_1412 1 CH_cqu_69 5 5 0.0000000000801057
Capsella rubella scaffold_7 1 CH_cru_137 4 5 0.000000102834
Davidia involucrata GWHABJS00000015 1 CH_din_238 3 4 0.0000491415
Durio zibethinus NW_019167960.1 1 CH_dzi_345 3 6 0.000542654
Eutrema salsugineum scaffold_14 1 CH_esa_24 7 10 0.00000000000000287099
Fragaria vesca Fvb6 1 CH_fve_109 4 4 0.000000012559
Fragaria vesca Fvb6 1 CH_fve_234 3 3 0.0000170541
Helianthus annuus HanXRQChr12 1 CH_han_48 6 6 0.00000000000000744322
Lupinus albus Lalb_Chr04 1 CH_lal_37 6 12 0.0000000000227567
Lotus japonicus chr1 1 CH_lja_52 5 5 0.0000000000232926
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_280 3 3 0.00000911523
Magnolia biondii Chr16 1 CH_mbi_204 5 42 0.000000713123
Malus domestica Chr12 1 CH_mdo_157 5 12 0.00000000614289
Manihot esculenta Chromosome09 1 CH_mes_267 3 3 0.0000334699
Marchantia polymorpha scaffold_118 1 CH_mpo_114 3 4 0.000567847
Marchantia polymorpha scaffold_85 1 CH_mpo_32 7 51 0.000000159545
Marchantia polymorpha scaffold_22 1 CH_mpo_64 4 10 0.0000555537
Marchantia polymorpha scaffold_50 1 CH_mpo_86 3 3 0.00014217
Medicago truncatula chr7 1 CH_mtr_439 3 3 0.00000925259
Nicotiana tabacum Nitab4.5_0001410 1 CH_nta_83 3 4 0.0000490952
Oryza sativa ssp. japonica chr02 1 CH_osa_34 6 13 0.00000000000942651
Oryza sativa ssp. japonica chr03 1 CH_osa_39 6 15 0.0000000000174952
Petunia axillaris Peaxi162Scf00620 1 CH_pax_147 3 3 0.00000987543
Physcomitrium patens Chr14 1 CH_ppa_10 6 14 0.0000000000780247
Physcomitrium patens Chr21 1 CH_ppa_120 3 4 0.0001347
Physcomitrium patens Chr18 1 CH_ppa_121 3 4 0.0001347
Physcomitrium patens Chr07 1 CH_ppa_312 3 6 0.000672498
Papaver somniferum NC_039361.1 1 CH_pso_294 4 10 0.00000065656
Papaver somniferum NC_039365.1 1 CH_pso_445 3 5 0.0000751338
Quercus lobata CM012294 1 CH_qlo_605 3 4 0.0000212636
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_432 3 4 0.0000168822
Rhododendron simsii chr09 1 CH_rsi_307 3 3 0.0000309827
Rhododendron simsii chr03 1 CH_rsi_308 3 3 0.0000309827
Rhododendron simsii chr06 1 CH_rsi_394 4 20 0.00013878
Rhododendron simsii chr07 1 CH_rsi_56 6 6 0.0000000000000228231
Sequoiadendron giganteum chr9 1 CH_sgi_1388 3 5 0.000832363
Sequoiadendron giganteum chr6 1 CH_sgi_140 7 7 1.62299e-16
Sequoiadendron giganteum chr4 1 CH_sgi_199 6 6 0.000000000000141753
Sequoiadendron giganteum chr2 1 CH_sgi_289 6 10 0.0000000000296486
Sequoiadendron giganteum chr1 1 CH_sgi_44 12 19 1.14683e-26
Sequoiadendron giganteum chr9 1 CH_sgi_988 3 3 0.0000833927
Solanum lycopersicum SL4.0ch03 1 CH_sly_102 5 9 0.000000000475835
Selaginella moellendorffii scaffold_11 1 CH_smo_104 3 7 0.000166323
Schrenkiella parvula ch7-1 1 CH_spa_245 3 6 0.000426867
Solanum tuberosum ST4.03ch03 1 CH_stu_345 3 4 0.000027894
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_390 3 7 0.00060736
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_123 4 5 0.000000285622
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_56 5 5 0.0000000000664267
Zea mays 6 1 CH_zma_11 7 13 0.00000000000000474875
Zea mays 1 1 CH_zma_130 3 3 0.0000213969
Zea mays 5 1 CH_zma_131 3 3 0.0000213969
Zea mays 1 1 CH_zma_35 5 6 0.0000000000729658
Anthoceros agrestis Sc2ySwM_344 2 CH_aag_5 7 18 5.3566e-18
Arabidopsis lyrata scaffold_7 2 CH_aly_82 4 4 0.00000000916755
Avicennia marina ScioBoG_25048_HRSCAF_25167 2 CH_ama_42 3 3 0.0000171737
Arabidopsis thaliana Chr5 2 CH_ath_22 6 12 0.0000000000000709662
Brassica carinata ChrC01 2 CH_bca_645 3 3 0.0000677004
Camellia sinensis var. sinensis Chr7 2 CH_camsi_163 5 9 0.000000000839652
Cardamine hirsuta Chr8 2 CH_chi_97 4 4 0.0000000173885
Chenopodium quinoa C_Quinoa_Scaffold_1971 2 CH_cqu_317 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_1817 2 CH_cqu_318 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_3631 2 CH_cqu_319 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_3489 2 CH_cqu_320 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_1280 2 CH_cqu_321 3 3 0.0000660065
Chenopodium quinoa C_Quinoa_Scaffold_1516 2 CH_cqu_517 3 5 0.000658932
Chenopodium quinoa C_Quinoa_Scaffold_2048 2 CH_cqu_68 5 5 0.0000000000801057
Chenopodium quinoa C_Quinoa_Scaffold_1412 2 CH_cqu_69 5 5 0.0000000000801057
Capsella rubella scaffold_7 2 CH_cru_137 4 5 0.000000102834
Davidia involucrata GWHABJS00000015 2 CH_din_238 3 4 0.0000491415
Durio zibethinus NW_019167960.1 2 CH_dzi_345 3 6 0.000542654
Eutrema salsugineum scaffold_14 2 CH_esa_24 7 10 0.00000000000000287099
Fragaria vesca Fvb6 2 CH_fve_109 4 4 0.000000012559
Fragaria vesca Fvb6 2 CH_fve_234 3 3 0.0000170541
Helianthus annuus HanXRQChr12 2 CH_han_48 6 6 0.00000000000000744322
Lupinus albus Lalb_Chr04 2 CH_lal_37 6 12 0.0000000000227567
Lotus japonicus chr1 2 CH_lja_52 5 5 0.0000000000232926
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_280 3 3 0.00000911523
Magnolia biondii Chr16 2 CH_mbi_204 5 42 0.000000713123
Malus domestica Chr12 2 CH_mdo_157 5 12 0.00000000614289
Manihot esculenta Chromosome09 2 CH_mes_267 3 3 0.0000334699
Marchantia polymorpha scaffold_118 2 CH_mpo_114 3 4 0.000567847
Marchantia polymorpha scaffold_85 2 CH_mpo_32 7 51 0.000000159545
Marchantia polymorpha scaffold_22 2 CH_mpo_64 4 10 0.0000555537
Marchantia polymorpha scaffold_50 2 CH_mpo_86 3 3 0.00014217
Nicotiana tabacum Nitab4.5_0001410 2 CH_nta_83 3 4 0.0000490952
Oryza sativa ssp. japonica chr02 2 CH_osa_34 6 13 0.00000000000942651
Oryza sativa ssp. japonica chr03 2 CH_osa_39 6 15 0.0000000000174952
Petunia axillaris Peaxi162Scf00620 2 CH_pax_147 3 3 0.00000987543
Physcomitrium patens Chr14 2 CH_ppa_10 6 14 0.0000000000780247
Physcomitrium patens Chr21 2 CH_ppa_120 3 4 0.0001347
Physcomitrium patens Chr18 2 CH_ppa_121 3 4 0.0001347
Physcomitrium patens Chr07 2 CH_ppa_312 3 6 0.000672498
Papaver somniferum NC_039361.1 2 CH_pso_294 4 10 0.00000065656
Papaver somniferum NC_039365.1 2 CH_pso_445 3 5 0.0000751338
Quercus lobata CM012294 2 CH_qlo_605 3 4 0.0000212636
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_432 3 4 0.0000168822
Rhododendron simsii chr09 2 CH_rsi_307 3 3 0.0000309827
Rhododendron simsii chr03 2 CH_rsi_308 3 3 0.0000309827
Rhododendron simsii chr06 2 CH_rsi_394 4 20 0.00013878
Rhododendron simsii chr07 2 CH_rsi_56 6 6 0.0000000000000228231
Sequoiadendron giganteum chr9 2 CH_sgi_1388 3 5 0.000832363
Sequoiadendron giganteum chr6 2 CH_sgi_140 7 7 1.62299e-16
Sequoiadendron giganteum chr4 2 CH_sgi_199 6 6 0.000000000000141753
Sequoiadendron giganteum chr2 2 CH_sgi_289 6 10 0.0000000000296486
Sequoiadendron giganteum chr1 2 CH_sgi_44 12 19 1.14683e-26
Sequoiadendron giganteum chr9 2 CH_sgi_988 3 3 0.0000833927
Solanum lycopersicum SL4.0ch03 2 CH_sly_102 5 9 0.000000000475835
Selaginella moellendorffii scaffold_11 2 CH_smo_104 3 7 0.000166323
Schrenkiella parvula ch7-1 2 CH_spa_245 3 6 0.000426867
Solanum tuberosum ST4.03ch03 2 CH_stu_345 3 4 0.000027894
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_390 3 7 0.00060736
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_123 4 5 0.000000285622
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_56 5 5 0.0000000000664267
Zea mays 6 2 CH_zma_11 7 13 0.00000000000000474875
Zea mays 1 2 CH_zma_130 3 3 0.0000213969
Zea mays 5 2 CH_zma_131 3 3 0.0000213969
Zea mays 1 2 CH_zma_35 5 6 0.0000000000729658

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001