Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.extensin activities.extensin glycosylation.extensin beta-1,2-arabinosyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_535 2 5 0.000704895
Actinidia chinensis Lachesis_group12 1 CH_ach_289 2 3 0.000977721
Arabidopsis lyrata scaffold_2 1 CH_aly_296 2 2 0.000198013
Arabidopsis thaliana Chr1 1 CH_ath_265 2 2 0.0000859476
Chara braunii BFEA01000112 1 CH_cbr_59 2 2 0.0000719269
Capsella rubella scaffold_2 1 CH_cru_155 3 5 0.000000320723
Medicago truncatula chr4 1 CH_mtr_47 6 12 1.70384e-17
Punica granatum NC_045133.1 1 CH_pgr_198 2 2 0.0000750356
Quercus lobata CM012294 1 CH_qlo_874 2 2 0.000309773
Tripterygium wilfordii NC_052233.1 1 CH_twi_47 4 5 0.0000000000389886
Acer truncatum chr13 2 CH_acertr_535 2 5 0.000704895
Actinidia chinensis Lachesis_group12 2 CH_ach_289 2 3 0.000977721
Arabidopsis lyrata scaffold_2 2 CH_aly_296 2 2 0.000198013
Arabidopsis thaliana Chr1 2 CH_ath_265 2 2 0.0000859476
Chara braunii BFEA01000112 2 CH_cbr_59 2 2 0.0000719269
Capsella rubella scaffold_2 2 CH_cru_155 3 5 0.000000320723
Eucalyptus grandis Chr09 2 CH_egr_381 3 3 0.0000000205534
Punica granatum NC_045133.1 2 CH_pgr_198 2 2 0.0000750356
Quercus lobata CM012294 2 CH_qlo_874 2 2 0.000309773
Tripterygium wilfordii NC_052233.1 2 CH_twi_47 4 5 0.0000000000389886

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001