Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.proline-rich protein activities.glycoprotein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_237 2 2 0.000547395
Acer truncatum chr12 1 CH_acertr_233 3 14 0.0000271099
Actinidia chinensis Lachesis_group9 1 CH_ach_135 2 2 0.000162964
Arabidopsis lyrata scaffold_4 1 CH_aly_449 2 2 0.000990066
Arabidopsis lyrata scaffold_1 1 CH_aly_450 2 2 0.000990066
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_55 3 6 0.000000850101
Arabidopsis thaliana Chr2 1 CH_ath_343 2 2 0.000286492
Brassica carinata ChrC02 1 CH_bca_382 3 4 0.00000186415
Brassica napus C04 1 CH_bna_230 3 3 0.000000351045
Brassica oleracea C4 1 CH_bol_431 2 2 0.000915212
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_99 3 3 0.000000205643
Cicer arietinum L. Ca_LG4_v3 1 CH_car_159 2 2 0.0000778301
Corylus avellana 2 1 CH_cav_251 2 2 0.0000766695
Carpinus fangiana Cfa02 1 CH_cfa_35 4 4 0.00000000000130333
Cardamine hirsuta Chr4 1 CH_chi_359 2 2 0.000414723
Carya illinoinensis Chr07 1 CH_cil_352 2 2 0.0000619828
Citrullus lanatus CG_Chr09 1 CH_cla_121 2 2 0.0000887115
Cucumis melo chr01 1 CH_cme_178 2 2 0.0000667111
Capsella rubella scaffold_4 1 CH_cru_412 2 2 0.000731154
Cucumis sativus L. chr7 1 CH_csa_204 2 2 0.0000834759
Davidia involucrata GWHABJS00000007 1 CH_din_447 2 3 0.000450094
Gossypium hirsutum A07 1 CH_ghi_298 3 3 0.000000598905
Gossypium hirsutum D07 1 CH_ghi_354 3 4 0.00000239528
Glycine max Gm10 1 CH_gma_377 2 2 0.000113867
Gossypium raimondii Chr01 1 CH_gra_148 3 3 0.000000241431
Helianthus annuus HanXRQChr01 1 CH_han_505 2 2 0.000115929
Hydrangea macrophylla Hma1.2p1_0212F.1 1 CH_hma_321 2 3 0.000333241
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_65 4 4 0.00000000000203719
Malus domestica Chr03 1 CH_mdo_468 2 2 0.000113763
Manihot esculenta Chromosome01 1 CH_mes_287 2 2 0.0000610631
Medicago truncatula chr1 1 CH_mtr_518 2 2 0.0000410863
Prunus persica Pp08 1 CH_ppe_333 2 2 0.0000745962
Pisum sativum chr6LG2 1 CH_psa_218 2 2 0.0000521635
Populus trichocarpa Chr14 1 CH_ptr_88 4 4 0.0000000000202774
Phaseolus vulgaris Chr07 1 CH_pvu_275 2 2 0.0000734727
Quercus lobata 12 1 CH_qlo_316 3 3 0.00000000399842
Salix brachista GWHAAZH00000014 1 CH_sbr_100 3 3 0.0000000595633
Salix brachista GWHAAZH00000002 1 CH_sbr_382 2 2 0.00063014
Simmondsia chinensis GWHAASQ00000024 1 CH_sci_120 3 19 0.0000420988
Selenicereus undatus Scaffold_33675 1 CH_sun_67 3 6 0.00000316701
Theobroma cacao Chromosome_1 1 CH_tca_21 6 8 9.29478e-18
Tarenaya hassleriana NW_010965946.1 1 CH_tha_49 3 3 0.0000000731817
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_59 3 3 0.00000000859546
Tripterygium wilfordii NC_052249.1 1 CH_twi_31 4 5 0.00000000000259936
Vitis vinifera chr7 1 CH_vvi_117 3 3 0.0000000086787
Aethionema arabicum LG-1 2 CH_aar_237 2 2 0.000547395
Acer truncatum chr12 2 CH_acertr_233 3 14 0.0000271099
Actinidia chinensis Lachesis_group9 2 CH_ach_135 2 2 0.000162964
Arabidopsis lyrata scaffold_4 2 CH_aly_449 2 2 0.000990066
Arabidopsis lyrata scaffold_1 2 CH_aly_450 2 2 0.000990066
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_55 3 6 0.000000850101
Arabidopsis thaliana Chr2 2 CH_ath_343 2 2 0.000286492
Brassica carinata ChrC02 2 CH_bca_382 3 4 0.00000186415
Brassica oleracea C4 2 CH_bol_431 2 2 0.000915212
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_99 3 3 0.000000205643
Cicer arietinum L. Ca_LG4_v3 2 CH_car_159 2 2 0.0000778301
Corylus avellana 2 2 CH_cav_251 2 2 0.0000766695
Carpinus fangiana Cfa02 2 CH_cfa_35 4 4 0.00000000000130333
Cardamine hirsuta Chr4 2 CH_chi_359 2 2 0.000414723
Carya illinoinensis Chr07 2 CH_cil_352 2 2 0.0000619828
Citrullus lanatus CG_Chr09 2 CH_cla_121 2 2 0.0000887115
Cucumis melo chr01 2 CH_cme_178 2 2 0.0000667111
Capsella rubella scaffold_4 2 CH_cru_412 2 2 0.000731154
Cucumis sativus L. chr7 2 CH_csa_204 2 2 0.0000834759
Davidia involucrata GWHABJS00000007 2 CH_din_447 2 3 0.000450094
Gossypium hirsutum A07 2 CH_ghi_298 3 3 0.000000598905
Gossypium hirsutum D07 2 CH_ghi_354 3 4 0.00000239528
Glycine max Gm10 2 CH_gma_377 2 2 0.000113867
Gossypium raimondii Chr01 2 CH_gra_148 3 3 0.000000241431
Helianthus annuus HanXRQChr01 2 CH_han_505 2 2 0.000115929
Hydrangea macrophylla Hma1.2p1_0212F.1 2 CH_hma_321 2 3 0.000333241
Lotus japonicus chr5 2 CH_lja_264 2 2 0.0000715077
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_65 4 4 0.00000000000203719
Malus domestica Chr03 2 CH_mdo_468 2 2 0.000113763
Manihot esculenta Chromosome01 2 CH_mes_287 2 2 0.0000610631
Prunus persica Pp08 2 CH_ppe_333 2 2 0.0000745962
Pisum sativum chr6LG2 2 CH_psa_218 2 2 0.0000521635
Populus trichocarpa Chr14 2 CH_ptr_88 4 4 0.0000000000202774
Phaseolus vulgaris Chr07 2 CH_pvu_275 2 2 0.0000734727
Quercus lobata 12 2 CH_qlo_316 3 3 0.00000000399842
Salix brachista GWHAAZH00000014 2 CH_sbr_100 3 3 0.0000000595633
Salix brachista GWHAAZH00000002 2 CH_sbr_382 2 2 0.00063014
Simmondsia chinensis GWHAASQ00000024 2 CH_sci_120 3 19 0.0000420988
Selenicereus undatus Scaffold_33675 2 CH_sun_67 3 6 0.00000316701
Theobroma cacao Chromosome_1 2 CH_tca_21 6 8 9.29478e-18
Tarenaya hassleriana NW_010965946.1 2 CH_tha_49 3 3 0.0000000731817
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_59 3 3 0.00000000859546
Tripterygium wilfordii NC_052249.1 2 CH_twi_31 4 5 0.00000000000259936
Vitis vinifera chr7 2 CH_vvi_117 3 3 0.0000000086787

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001