Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.Xylogen-type arabinogalactan protein (XYP/XYLP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 1 | CH_acertr_174 | 3 | 3 | 0.00000123008 |
| Camellia sinensis var. sinensis | Chr9 | 1 | CH_camsi_287 | 4 | 11 | 0.00000017344 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_368 | 3 | 3 | 0.00000176627 |
| Capsicum annuum | PGAv.1.6.scaffold1549 | 1 | CH_can_452 | 3 | 13 | 0.000834423 |
| Coffea canephora | chr1 | 1 | CH_ccan_361 | 2 | 4 | 0.000715481 |
| Corchorus olitorius | AWUE01014774.1 | 1 | CH_col_115 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019167938.1 | 1 | CH_dzi_148 | 3 | 3 | 0.00000312251 |
| Glycine max | Gm16 | 1 | CH_gma_49 | 8 | 72 | 0.000000000000658961 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_158 | 4 | 4 | 0.000000000529756 |
| Hydrangea macrophylla | Hma1.2p1_1572F.1 | 1 | CH_hma_68 | 3 | 3 | 0.000000647896 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_275 | 3 | 3 | 0.00000365834 |
| Lonicera japonica | GWHAAZE00000006 | 1 | CH_lonja_285 | 4 | 18 | 0.00000467078 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 1 | CH_lsa_267 | 3 | 3 | 0.00000527098 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_350 | 3 | 5 | 0.0000526705 |
| Malus domestica | Chr11 | 1 | CH_mdo_167 | 4 | 5 | 0.00000000868942 |
| Medicago truncatula | chr1 | 1 | CH_mtr_409 | 3 | 4 | 0.00000460762 |
| Nelumbo nucifera | chr6 | 1 | CH_nnu_33 | 5 | 6 | 0.000000000000488361 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_55 | 4 | 4 | 0.000000000339458 |
| Olea europaea | chr16 | 1 | CH_oeu_113 | 3 | 3 | 0.00000658207 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_119 | 4 | 12 | 0.000000218561 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_238 | 3 | 5 | 0.0000817604 |
| Punica granatum | NC_045131.1 | 1 | CH_pgr_296 | 3 | 7 | 0.000285882 |
| Papaver somniferum | NC_039367.1 | 1 | CH_pso_119 | 5 | 11 | 0.0000000000473239 |
| Papaver somniferum | NC_039364.1 | 1 | CH_pso_152 | 4 | 5 | 0.00000000216773 |
| Populus trichocarpa | Chr02 | 1 | CH_ptr_253 | 3 | 3 | 0.00000485607 |
| Quercus lobata | 6 | 1 | CH_qlo_460 | 3 | 3 | 0.00000047981 |
| Salix brachista | GWHAAZH00000005 | 1 | CH_sbr_154 | 3 | 3 | 0.00000271013 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_10 | 13 | 14 | 2.18166e-36 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_231 | 6 | 9 | 0.000000000000573444 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_987 | 3 | 4 | 0.0000776453 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_222 | 3 | 3 | 0.00000289388 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_272 | 3 | 5 | 0.0000289205 |
| Solanum pennellii | Spenn-ch09 | 1 | CH_spe_213 | 3 | 4 | 0.00000664593 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_214 | 3 | 4 | 0.00000664593 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_250 | 3 | 3 | 0.00000220596 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_325 | 3 | 5 | 0.0000220475 |
| Selenicereus undatus | Scaffold_10417 | 1 | CH_sun_57 | 3 | 3 | 0.000000950441 |
| Trochodendron aralioides | group16 | 1 | CH_tar_233 | 3 | 4 | 0.0000437511 |
| Trochodendron aralioides | group2 | 1 | CH_tar_86 | 4 | 4 | 0.00000000689889 |
| Trochodendron aralioides | group1 | 1 | CH_tar_87 | 4 | 4 | 0.00000000689889 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_211 | 3 | 3 | 0.00000177015 |
| Tripterygium wilfordii | NC_052253.1 | 1 | CH_twi_135 | 3 | 3 | 0.00000451781 |
| Acer truncatum | chr5 | 2 | CH_acertr_174 | 3 | 3 | 0.00000123008 |
| Camellia sinensis var. sinensis | Chr9 | 2 | CH_camsi_287 | 4 | 11 | 0.00000017344 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_368 | 3 | 3 | 0.00000176627 |
| Capsicum annuum | PGAv.1.6.scaffold1549 | 2 | CH_can_452 | 3 | 13 | 0.000834423 |
| Coffea canephora | chr1 | 2 | CH_ccan_361 | 2 | 4 | 0.000715481 |
| Corchorus olitorius | AWUE01014774.1 | 2 | CH_col_115 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019167938.1 | 2 | CH_dzi_148 | 3 | 3 | 0.00000312251 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_525 | 3 | 3 | 0.00000146957 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_526 | 3 | 3 | 0.00000146957 |
| Glycine max | Gm16 | 2 | CH_gma_49 | 8 | 72 | 0.000000000000658961 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_158 | 4 | 4 | 0.000000000529756 |
| Hydrangea macrophylla | Hma1.2p1_1572F.1 | 2 | CH_hma_68 | 3 | 3 | 0.000000647896 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_275 | 3 | 3 | 0.00000365834 |
| Lonicera japonica | GWHAAZE00000006 | 2 | CH_lonja_285 | 4 | 18 | 0.00000467078 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 2 | CH_lsa_267 | 3 | 3 | 0.00000527098 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_350 | 3 | 5 | 0.0000526705 |
| Malus domestica | Chr11 | 2 | CH_mdo_167 | 4 | 5 | 0.00000000868942 |
| Nelumbo nucifera | chr6 | 2 | CH_nnu_33 | 5 | 6 | 0.000000000000488361 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_55 | 4 | 4 | 0.000000000339458 |
| Olea europaea | chr16 | 2 | CH_oeu_113 | 3 | 3 | 0.00000658207 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_119 | 4 | 12 | 0.000000218561 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_238 | 3 | 5 | 0.0000817604 |
| Punica granatum | NC_045131.1 | 2 | CH_pgr_296 | 3 | 7 | 0.000285882 |
| Papaver somniferum | NC_039367.1 | 2 | CH_pso_119 | 5 | 11 | 0.0000000000473239 |
| Papaver somniferum | NC_039364.1 | 2 | CH_pso_152 | 4 | 5 | 0.00000000216773 |
| Populus trichocarpa | Chr02 | 2 | CH_ptr_253 | 3 | 3 | 0.00000485607 |
| Quercus lobata | 6 | 2 | CH_qlo_460 | 3 | 3 | 0.00000047981 |
| Salix brachista | GWHAAZH00000005 | 2 | CH_sbr_154 | 3 | 3 | 0.00000271013 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_10 | 13 | 14 | 2.18166e-36 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_231 | 6 | 9 | 0.000000000000573444 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_987 | 3 | 4 | 0.0000776453 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_222 | 3 | 3 | 0.00000289388 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_272 | 3 | 5 | 0.0000289205 |
| Solanum pennellii | Spenn-ch09 | 2 | CH_spe_213 | 3 | 4 | 0.00000664593 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_214 | 3 | 4 | 0.00000664593 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_250 | 3 | 3 | 0.00000220596 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_325 | 3 | 5 | 0.0000220475 |
| Selenicereus undatus | Scaffold_10417 | 2 | CH_sun_57 | 3 | 3 | 0.000000950441 |
| Trochodendron aralioides | group16 | 2 | CH_tar_233 | 3 | 4 | 0.0000437511 |
| Trochodendron aralioides | group2 | 2 | CH_tar_86 | 4 | 4 | 0.00000000689889 |
| Trochodendron aralioides | group1 | 2 | CH_tar_87 | 4 | 4 | 0.00000000689889 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_211 | 3 | 3 | 0.00000177015 |
| Tripterygium wilfordii | NC_052253.1 | 2 | CH_twi_135 | 3 | 3 | 0.00000451781 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |