Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cell wall proteins.hydroxyproline-rich glycoprotein activities.arabinogalactan-protein activities.Fasciclin-type arabinogalactan protein (FLA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_121 5 5 0.000000000006544
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_236 4 6 0.000000163768
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_393 3 3 0.0000178062
Camellia sinensis var. sinensis Chr10 1 CH_camsi_197 4 4 0.00000000432459
Camellia sinensis var. sinensis Chr4 1 CH_camsi_29 8 12 1.03728e-19
Cannabis sativa NC_044375.1 1 CH_cansat_1 14 17 2.953e-38
Capsicum annuum PGAv.1.6.scaffold1169 1 CH_can_108 4 4 0.0000000179742
Cicer arietinum L. Ca_LG2_v3 1 CH_car_8 5 6 0.000000000087689
Corylus avellana 6 1 CH_cav_14 7 9 1.41086e-16
Citrus clementina scaffold_8 1 CH_ccl_222 3 3 0.00000686396
Carpinus fangiana Cfa04 1 CH_cfa_1 11 11 2.0525e-29
Carpinus fangiana Cfa04 1 CH_cfa_98 4 4 0.0000000410092
Carya illinoinensis Chr13 1 CH_cil_12 12 13 5.60282e-32
Carya illinoinensis Chr14 1 CH_cil_196 4 4 0.0000000292356
Davidia involucrata GWHABJS00000015 1 CH_din_199 3 3 0.00000759399
Fragaria vesca Fvb2 1 CH_fve_243 3 4 0.0000237287
Glycine max Gm12 1 CH_gma_20 9 13 7.54732e-20
Glycine max Gm11 1 CH_gma_25 8 10 4.73045e-18
Glycine max Gm08 1 CH_gma_353 3 3 0.0000777742
Glycine max Gm11 1 CH_gma_478 3 4 0.000310834
Lupinus albus Lalb_Chr03 1 CH_lal_228 3 4 0.0000988338
Lotus japonicus chr3 1 CH_lja_36 6 7 0.0000000000000521376
Lonicera japonica GWHAAZE00000003 1 CH_lonja_280 4 15 0.00000424247
Magnolia biondii Chr14 1 CH_mbi_263 4 28 0.00000812633
Manihot esculenta Chromosome11 1 CH_mes_41 7 7 2.74653e-17
Manihot esculenta Chromosome04 1 CH_mes_44 7 8 2.19551e-16
Marchantia polymorpha scaffold_27 1 CH_mpo_9 6 9 0.00000000000000652048
Medicago truncatula chr8 1 CH_mtr_443 3 3 0.0000102807
Medicago truncatula chr2 1 CH_mtr_444 3 3 0.0000102807
Medicago truncatula chr2 1 CH_mtr_445 3 3 0.0000102807
Medicago truncatula chr1 1 CH_mtr_545 3 4 0.0000411047
Olea europaea chr11 1 CH_oeu_16 5 5 0.00000000000123923
Punica granatum NC_045132.1 1 CH_pgr_82 4 4 0.0000000112244
Prunus persica Pp06 1 CH_ppe_61 6 6 0.00000000000000387922
Populus trichocarpa Chr13 1 CH_ptr_158 5 10 0.0000000228025
Populus trichocarpa Chr19 1 CH_ptr_223 4 6 0.00000117747
Phaseolus vulgaris Chr11 1 CH_pvu_8 13 22 1.06826e-29
Quercus lobata 1 1 CH_qlo_29 10 12 1.60001e-26
Salvia bowleyana GWHASIU00000003 1 CH_sbo_99 6 58 0.00000000140617
Salix brachista GWHAAZH00000013 1 CH_sbr_168 4 8 0.00000430649
Trochodendron aralioides group18 1 CH_tar_11 7 7 3.27621e-18
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_203 3 4 0.0000608534
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_274 3 5 0.000152041
Vigna mungo CM024076.1 1 CH_vmu_9 8 16 4.21534e-17
Vitis vinifera chr8 1 CH_vvi_47 6 8 0.00000000000000148198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_121 5 5 0.000000000006544
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_236 4 6 0.000000163768
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_393 3 3 0.0000178062
Camellia sinensis var. sinensis Chr10 2 CH_camsi_197 4 4 0.00000000432459
Camellia sinensis var. sinensis Chr4 2 CH_camsi_29 8 12 1.03728e-19
Cannabis sativa NC_044375.1 2 CH_cansat_1 14 17 2.953e-38
Capsicum annuum PGAv.1.6.scaffold1169 2 CH_can_108 4 4 0.0000000179742
Cicer arietinum L. Ca_LG2_v3 2 CH_car_8 5 6 0.000000000087689
Corylus avellana 6 2 CH_cav_14 7 9 1.41086e-16
Citrus clementina scaffold_8 2 CH_ccl_222 3 3 0.00000686396
Carpinus fangiana Cfa04 2 CH_cfa_1 11 11 2.0525e-29
Carpinus fangiana Cfa04 2 CH_cfa_98 4 4 0.0000000410092
Carya illinoinensis Chr13 2 CH_cil_12 12 13 5.60282e-32
Carya illinoinensis Chr14 2 CH_cil_196 4 4 0.0000000292356
Davidia involucrata GWHABJS00000015 2 CH_din_199 3 3 0.00000759399
Fragaria vesca Fvb2 2 CH_fve_243 3 4 0.0000237287
Glycine max Gm12 2 CH_gma_20 9 13 7.54732e-20
Glycine max Gm11 2 CH_gma_25 8 10 4.73045e-18
Glycine max Gm08 2 CH_gma_353 3 3 0.0000777742
Glycine max Gm11 2 CH_gma_478 3 4 0.000310834
Lupinus albus Lalb_Chr03 2 CH_lal_228 3 4 0.0000988338
Lotus japonicus chr3 2 CH_lja_36 6 7 0.0000000000000521376
Lonicera japonica GWHAAZE00000003 2 CH_lonja_280 4 15 0.00000424247
Magnolia biondii Chr14 2 CH_mbi_263 4 28 0.00000812633
Manihot esculenta Chromosome11 2 CH_mes_41 7 7 2.74653e-17
Manihot esculenta Chromosome04 2 CH_mes_44 7 8 2.19551e-16
Marchantia polymorpha scaffold_27 2 CH_mpo_9 6 9 0.00000000000000652048
Olea europaea chr11 2 CH_oeu_16 5 5 0.00000000000123923
Punica granatum NC_045132.1 2 CH_pgr_82 4 4 0.0000000112244
Prunus persica Pp06 2 CH_ppe_61 6 6 0.00000000000000387922
Populus trichocarpa Chr13 2 CH_ptr_158 5 10 0.0000000228025
Populus trichocarpa Chr19 2 CH_ptr_223 4 6 0.00000117747
Phaseolus vulgaris Chr11 2 CH_pvu_8 13 22 1.06826e-29
Quercus lobata 1 2 CH_qlo_29 10 12 1.60001e-26
Salvia bowleyana GWHASIU00000003 2 CH_sbo_99 6 58 0.00000000140617
Salix brachista GWHAAZH00000013 2 CH_sbr_168 4 8 0.00000430649
Trochodendron aralioides group18 2 CH_tar_11 7 7 3.27621e-18
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_203 3 4 0.0000608534
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_274 3 5 0.000152041
Vigna mungo CM024076.1 2 CH_vmu_9 8 16 4.21534e-17
Vitis vinifera chr8 2 CH_vvi_47 6 8 0.00000000000000148198

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001