Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.pectin.modification and degradation.pectin acetylesterase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 1 | CH_aar_119 | 3 | 4 | 0.0000227135 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 1 | CH_arhy_316 | 3 | 3 | 0.00000178815 |
| Citrus clementina | scaffold_5 | 1 | CH_ccl_172 | 3 | 3 | 0.000000565268 |
| Corchorus olitorius | AWUE01016240.1 | 1 | CH_col_119 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019168381.1 | 1 | CH_dzi_407 | 2 | 2 | 0.000973326 |
| Erythranthe guttata | scaffold_14 | 1 | CH_egut_219 | 3 | 3 | 0.00000445382 |
| Erythranthe guttata | scaffold_1 | 1 | CH_egut_58 | 5 | 6 | 0.00000000000552464 |
| Glycine max | Gm16 | 1 | CH_gma_338 | 3 | 6 | 0.0000492321 |
| Helianthus annuus | HanXRQChr03 | 1 | CH_han_294 | 3 | 3 | 0.00000101918 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_24 | 11 | 37 | 4.1982e-22 |
| Lonicera japonica | GWHAAZE00000008 | 1 | CH_lonja_314 | 3 | 3 | 0.0000176246 |
| Malus domestica | Chr04 | 1 | CH_mdo_280 | 3 | 3 | 0.00000176016 |
| Malus domestica | Chr12 | 1 | CH_mdo_356 | 3 | 5 | 0.0000175935 |
| Manihot esculenta | Chromosome17 | 1 | CH_mes_245 | 3 | 4 | 0.00000814144 |
| Manihot esculenta | Chromosome06 | 1 | CH_mes_79 | 5 | 7 | 0.00000000000438242 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_38 | 6 | 45 | 0.0000000000132857 |
| Nicotiana tabacum | Nitab4.5_0000063 | 1 | CH_nta_31 | 4 | 10 | 0.0000000581907 |
| Petunia axillaris | Peaxi162Scf00206 | 1 | CH_pax_276 | 3 | 6 | 0.000228326 |
| Petunia axillaris | Peaxi162Scf00045 | 1 | CH_pax_36 | 5 | 7 | 0.000000000101536 |
| Papaver somniferum | NC_039361.1 | 1 | CH_pso_191 | 4 | 7 | 0.0000000210422 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_38 | 6 | 6 | 3.86097e-17 |
| Papaver somniferum | NW_020650971.1 | 1 | CH_pso_456 | 3 | 8 | 0.000124511 |
| Quercus lobata | 12 | 1 | CH_qlo_341 | 4 | 11 | 0.0000000095305 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_288 | 3 | 3 | 0.000000200248 |
| Striga asiatica | scaffold89 | 1 | CH_sas_29 | 3 | 3 | 0.00000328525 |
| Striga asiatica | scaffold146 | 1 | CH_sas_30 | 3 | 3 | 0.00000328525 |
| Simmondsia chinensis | GWHAASQ00000013 | 1 | CH_sci_133 | 3 | 12 | 0.0000836043 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_61 | 6 | 14 | 0.000000000000581236 |
| Solanum pennellii | Spenn-ch08 | 1 | CH_spe_248 | 3 | 6 | 0.0000269875 |
| Tarenaya hassleriana | NW_010960187.1 | 1 | CH_tha_69 | 3 | 3 | 0.0000012075 |
| Aethionema arabicum | LG-1 | 2 | CH_aar_119 | 3 | 4 | 0.0000227135 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 2 | CH_arhy_316 | 3 | 3 | 0.00000178815 |
| Citrus clementina | scaffold_5 | 2 | CH_ccl_172 | 3 | 3 | 0.000000565268 |
| Corchorus olitorius | AWUE01016240.1 | 2 | CH_col_119 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019168381.1 | 2 | CH_dzi_407 | 2 | 2 | 0.000973326 |
| Erythranthe guttata | scaffold_14 | 2 | CH_egut_219 | 3 | 3 | 0.00000445382 |
| Erythranthe guttata | scaffold_1 | 2 | CH_egut_58 | 5 | 6 | 0.00000000000552464 |
| Glycine max | Gm16 | 2 | CH_gma_338 | 3 | 6 | 0.0000492321 |
| Helianthus annuus | HanXRQChr03 | 2 | CH_han_294 | 3 | 3 | 0.00000101918 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_24 | 11 | 37 | 4.1982e-22 |
| Lonicera japonica | GWHAAZE00000008 | 2 | CH_lonja_314 | 3 | 3 | 0.0000176246 |
| Malus domestica | Chr04 | 2 | CH_mdo_280 | 3 | 3 | 0.00000176016 |
| Malus domestica | Chr12 | 2 | CH_mdo_356 | 3 | 5 | 0.0000175935 |
| Manihot esculenta | Chromosome17 | 2 | CH_mes_245 | 3 | 4 | 0.00000814144 |
| Manihot esculenta | Chromosome06 | 2 | CH_mes_79 | 5 | 7 | 0.00000000000438242 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_38 | 6 | 45 | 0.0000000000132857 |
| Nicotiana tabacum | Nitab4.5_0000063 | 2 | CH_nta_31 | 4 | 10 | 0.0000000581907 |
| Petunia axillaris | Peaxi162Scf00206 | 2 | CH_pax_276 | 3 | 6 | 0.000228326 |
| Petunia axillaris | Peaxi162Scf00045 | 2 | CH_pax_36 | 5 | 7 | 0.000000000101536 |
| Papaver somniferum | NC_039361.1 | 2 | CH_pso_191 | 4 | 7 | 0.0000000210422 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_38 | 6 | 6 | 3.86097e-17 |
| Papaver somniferum | NW_020650971.1 | 2 | CH_pso_456 | 3 | 8 | 0.000124511 |
| Quercus lobata | 12 | 2 | CH_qlo_341 | 4 | 11 | 0.0000000095305 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_288 | 3 | 3 | 0.000000200248 |
| Striga asiatica | scaffold89 | 2 | CH_sas_29 | 3 | 3 | 0.00000328525 |
| Striga asiatica | scaffold146 | 2 | CH_sas_30 | 3 | 3 | 0.00000328525 |
| Simmondsia chinensis | GWHAASQ00000013 | 2 | CH_sci_133 | 3 | 12 | 0.0000836043 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_61 | 6 | 14 | 0.000000000000581236 |
| Solanum pennellii | Spenn-ch08 | 2 | CH_spe_248 | 3 | 6 | 0.0000269875 |
| Tarenaya hassleriana | NW_010960187.1 | 2 | CH_tha_69 | 3 | 3 | 0.0000012075 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |