Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.pectin.modification and degradation.pectate lyase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_21 | 4 | 10 | 0.00000000488268 |
| Acer truncatum | chr11 | 1 | CH_acertr_188 | 3 | 3 | 0.00000271362 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 1 | CH_arhy_410 | 3 | 3 | 0.0000279987 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_474 | 3 | 4 | 0.000111933 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 1 | CH_arhy_562 | 3 | 5 | 0.000279677 |
| Brassica carinata | ChrB02 | 1 | CH_bca_1117 | 3 | 6 | 0.000887108 |
| Coffea canephora | chr9 | 1 | CH_ccan_16 | 5 | 16 | 0.0000000000000861396 |
| Fragaria x ananassa | Fvb4-2 | 1 | CH_fan_651 | 3 | 9 | 0.000896562 |
| Gossypium hirsutum | D13 | 1 | CH_ghi_369 | 4 | 7 | 0.00000331751 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_85 | 6 | 7 | 0.000000000000693284 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_125 | 4 | 4 | 0.0000000824555 |
| Gossypium raimondii | Chr10 | 1 | CH_gra_16 | 8 | 10 | 5.66575e-18 |
| Gossypium raimondii | Chr13 | 1 | CH_gra_216 | 4 | 10 | 0.0000172173 |
| Helianthus annuus | HanXRQChr17 | 1 | CH_han_381 | 3 | 3 | 0.0000146605 |
| Lupinus albus | Lalb_Chr03 | 1 | CH_lal_24 | 6 | 6 | 0.0000000000000120519 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_337 | 3 | 4 | 0.0000494693 |
| Magnolia biondii | Chr10 | 1 | CH_mbi_628 | 3 | 29 | 0.000721808 |
| Manihot esculenta | Chromosome05 | 1 | CH_mes_176 | 4 | 6 | 0.000000179619 |
| Medicago truncatula | chr8 | 1 | CH_mtr_369 | 4 | 10 | 0.00000137112 |
| Medicago truncatula | chr5 | 1 | CH_mtr_382 | 4 | 11 | 0.00000215362 |
| Petunia axillaris | Peaxi162Scf00451 | 1 | CH_pax_153 | 3 | 3 | 0.0000150285 |
| Prunus persica | Pp01 | 1 | CH_ppe_282 | 3 | 4 | 0.0000151863 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_407 | 2 | 2 | 0.000782452 |
| Sechium edule | LG11 | 1 | CH_sed_156 | 3 | 3 | 0.0000154528 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_1287 | 3 | 5 | 0.000470735 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_17 | 13 | 15 | 1.48061e-33 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_2 | 19 | 22 | 2.40834e-51 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_711 | 3 | 3 | 0.0000471464 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_712 | 3 | 3 | 0.0000471464 |
| Selenicereus undatus | Scaffold_33679 | 1 | CH_sun_152 | 3 | 8 | 0.0000730909 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_21 | 4 | 10 | 0.00000000488268 |
| Acer truncatum | chr11 | 2 | CH_acertr_188 | 3 | 3 | 0.00000271362 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 2 | CH_arhy_410 | 3 | 3 | 0.0000279987 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_474 | 3 | 4 | 0.000111933 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 2 | CH_arhy_562 | 3 | 5 | 0.000279677 |
| Brassica carinata | ChrB02 | 2 | CH_bca_1117 | 3 | 6 | 0.000887108 |
| Coffea canephora | chr9 | 2 | CH_ccan_16 | 5 | 16 | 0.0000000000000861396 |
| Fragaria x ananassa | Fvb4-2 | 2 | CH_fan_651 | 3 | 9 | 0.000896562 |
| Gossypium hirsutum | D13 | 2 | CH_ghi_369 | 4 | 7 | 0.00000331751 |
| Gossypium hirsutum | A05 | 2 | CH_ghi_517 | 3 | 3 | 0.0000912475 |
| Gossypium hirsutum | D06 | 2 | CH_ghi_518 | 3 | 3 | 0.0000912475 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_85 | 6 | 7 | 0.000000000000693284 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_125 | 4 | 4 | 0.0000000824555 |
| Gossypium raimondii | Chr10 | 2 | CH_gra_16 | 8 | 10 | 5.66575e-18 |
| Gossypium raimondii | Chr13 | 2 | CH_gra_216 | 4 | 10 | 0.0000172173 |
| Helianthus annuus | HanXRQChr17 | 2 | CH_han_381 | 3 | 3 | 0.0000146605 |
| Lupinus albus | Lalb_Chr03 | 2 | CH_lal_24 | 6 | 6 | 0.0000000000000120519 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_337 | 3 | 4 | 0.0000494693 |
| Magnolia biondii | Chr10 | 2 | CH_mbi_628 | 3 | 29 | 0.000721808 |
| Manihot esculenta | Chromosome05 | 2 | CH_mes_176 | 4 | 6 | 0.000000179619 |
| Petunia axillaris | Peaxi162Scf00451 | 2 | CH_pax_153 | 3 | 3 | 0.0000150285 |
| Prunus persica | Pp01 | 2 | CH_ppe_282 | 3 | 4 | 0.0000151863 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_407 | 2 | 2 | 0.000782452 |
| Sechium edule | LG11 | 2 | CH_sed_156 | 3 | 3 | 0.0000154528 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_1287 | 3 | 5 | 0.000470735 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_17 | 13 | 15 | 1.48061e-33 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_2 | 19 | 22 | 2.40834e-51 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_711 | 3 | 3 | 0.0000471464 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_712 | 3 | 3 | 0.0000471464 |
| Selenicereus undatus | Scaffold_33679 | 2 | CH_sun_152 | 3 | 8 | 0.0000730909 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |