Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase (ASD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_265 2 2 0.000070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_131 6 59 0.0000000000224371
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_135 6 64 0.0000000000373779
Capsicum annuum PGAv.1.6.scaffold959 1 CH_can_332 2 2 0.000247831
Carya illinoinensis Chr09 1 CH_cil_33 6 6 1.44136e-19
Carica papaya supercontig_34 1 CH_cpa_81 3 5 0.000000542189
Chenopodium quinoa C_Quinoa_Scaffold_2689 1 CH_cqu_529 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3422 1 CH_cqu_530 2 2 0.000710732
Davidia involucrata GWHABJS00000015 1 CH_din_456 2 5 0.000500088
Glycine max Gm19 1 CH_gma_476 3 30 0.000306448
Glycine max Gm03 1 CH_gma_590 2 2 0.00079707
Glycine max Gm03 1 CH_gma_591 2 2 0.00079707
Lupinus albus Lalb_Chr22 1 CH_lal_42 4 5 0.0000000000325258
Lotus japonicus chr1 1 CH_lja_45 4 4 0.00000000000548526
Medicago truncatula chr7 1 CH_mtr_71 7 44 0.00000000000000173774
Oryza sativa ssp. japonica chr12 1 CH_osa_164 3 7 0.00000819616
Prunus persica Pp07 1 CH_ppe_165 3 4 0.0000000333876
Pisum sativum chr3LG5 1 CH_psa_111 3 3 0.000000142858
Phaseolus vulgaris Chr01 1 CH_pvu_65 4 5 0.000000000029748
Salix brachista GWHAAZH00000016 1 CH_sbr_357 2 3 0.000567096
Simmondsia chinensis GWHAASQ00000004 1 CH_sci_75 3 4 0.000000434928
Sequoiadendron giganteum chr9 1 CH_sgi_144 5 6 2.53467e-16
Selenicereus undatus Scaffold_10417 1 CH_sun_271 2 2 0.000726639
Trochodendron aralioides group18 1 CH_tar_249 2 2 0.0000600366
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_144 3 4 0.00000192504
Vigna mungo CM024070.1 1 CH_vmu_32 4 5 0.000000000020233
Acer truncatum chr1 2 CH_acertr_265 2 2 0.000070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_131 6 59 0.0000000000224371
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_135 6 64 0.0000000000373779
Capsicum annuum PGAv.1.6.scaffold959 2 CH_can_332 2 2 0.000247831
Carya illinoinensis Chr09 2 CH_cil_33 6 6 1.44136e-19
Carica papaya supercontig_34 2 CH_cpa_81 3 5 0.000000542189
Chenopodium quinoa C_Quinoa_Scaffold_2689 2 CH_cqu_529 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3422 2 CH_cqu_530 2 2 0.000710732
Davidia involucrata GWHABJS00000015 2 CH_din_456 2 5 0.000500088
Glycine max Gm19 2 CH_gma_476 3 30 0.000306448
Glycine max Gm03 2 CH_gma_590 2 2 0.00079707
Glycine max Gm03 2 CH_gma_591 2 2 0.00079707
Lupinus albus Lalb_Chr22 2 CH_lal_42 4 5 0.0000000000325258
Lotus japonicus chr1 2 CH_lja_45 4 4 0.00000000000548526
Oryza sativa ssp. japonica chr12 2 CH_osa_164 3 7 0.00000819616
Prunus persica Pp07 2 CH_ppe_165 3 4 0.0000000333876
Pisum sativum chr3LG5 2 CH_psa_111 3 3 0.000000142858
Phaseolus vulgaris Chr01 2 CH_pvu_65 4 5 0.000000000029748
Salix brachista GWHAAZH00000016 2 CH_sbr_357 2 3 0.000567096
Simmondsia chinensis GWHAASQ00000004 2 CH_sci_75 3 4 0.000000434928
Sequoiadendron giganteum chr9 2 CH_sgi_144 5 6 2.53467e-16
Selenicereus undatus Scaffold_10417 2 CH_sun_271 2 2 0.000726639
Trochodendron aralioides group18 2 CH_tar_249 2 2 0.0000600366
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_144 3 4 0.00000192504
Vigna mungo CM024070.1 2 CH_vmu_32 4 5 0.000000000020233

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001