Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase (BGAL)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carya illinoinensis Chr03 1 CH_cil_329 3 5 0.0000469903
Cucumis melo chr02 1 CH_cme_132 3 3 0.0000118228
Chenopodium quinoa C_Quinoa_Scaffold_1040 1 CH_cqu_250 3 3 0.00000383916
Cucumis sativus L. chr1 1 CH_csa_187 3 5 0.0000584831
Erythranthe guttata scaffold_4 1 CH_egut_230 3 3 0.0000090667
Phaseolus vulgaris Chr09 1 CH_pvu_240 3 4 0.0000369066
Quercus lobata 11 1 CH_qlo_604 3 4 0.0000212636
Sequoiadendron giganteum chr8 1 CH_sgi_1222 2 2 0.000292291
Carya illinoinensis Chr03 2 CH_cil_329 3 5 0.0000469903
Cucumis melo chr02 2 CH_cme_132 3 3 0.0000118228
Chenopodium quinoa C_Quinoa_Scaffold_1040 2 CH_cqu_250 3 3 0.00000383916
Cucumis sativus L. chr1 2 CH_csa_187 3 5 0.0000584831
Eucalyptus grandis Chr03 2 CH_egr_572 3 3 0.00000497906
Erythranthe guttata scaffold_4 2 CH_egut_230 3 3 0.0000090667
Phaseolus vulgaris Chr09 2 CH_pvu_240 3 4 0.0000369066
Quercus lobata 11 2 CH_qlo_604 3 4 0.0000212636
Sequoiadendron giganteum chr8 2 CH_sgi_1222 2 2 0.000292291

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001