Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.rhamnogalacturonan-I galactose oxidase (RUBY)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica rapa A07 1 CH_bra_351 2 2 0.00064397
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_66 3 3 0.0000000102821
Camellia sinensis var. sinensis Chr9 1 CH_camsi_649 2 2 0.000137564
Cannabis sativa NC_044370.1 1 CH_cansat_104 3 3 0.0000000258716
Capsicum annuum PGAv.1.6.scaffold1271 1 CH_can_94 3 3 0.0000000102372
Carya illinoinensis Chr08 1 CH_cil_87 4 4 0.000000000000714457
Cucumis melo chr04 1 CH_cme_233 2 2 0.000200133
Corchorus olitorius AWUE01019218.1 1 CH_col_3 6 7 3.35351e-16
Carica papaya supercontig_140 1 CH_cpa_304 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_1566 1 CH_cqu_307 2 2 0.0000473821
Cucumis sativus L. chr3 1 CH_csa_257 2 2 0.000250428
Daucus carota DCARv2_Chr3 1 CH_dca_300 2 2 0.000191333
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_11 6 6 3.43912e-19
Fragaria vesca Fvb2 1 CH_fve_392 2 2 0.000353461
Glycine max Gm06 1 CH_gma_558 2 2 0.000569336
Gossypium raimondii Chr06 1 CH_gra_135 3 3 0.000000150895
Helianthus annuus HanXRQChr09 1 CH_han_23 9 55 8.93306e-20
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_219 3 3 0.000000653919
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_70 5 9 0.00000000000304613
Malus domestica Chr08 1 CH_mdo_282 3 5 0.00000181155
Malus domestica Chr15 1 CH_mdo_89 4 4 0.000000000020614
Nelumbo nucifera chr5 1 CH_nnu_321 2 2 0.000130804
Petunia axillaris Peaxi162Scf00287 1 CH_pax_90 3 3 0.000000148503
Prunus persica Pp01 1 CH_ppe_332 2 2 0.0000745962
Papaver somniferum NC_039364.1 1 CH_pso_576 2 2 0.000337849
Populus trichocarpa Chr05 1 CH_ptr_371 2 2 0.0001734
Phaseolus vulgaris Chr09 1 CH_pvu_352 2 2 0.000220418
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_357 3 6 0.00000166833
Salix brachista GWHAAZH00000005 1 CH_sbr_280 2 2 0.000189042
Sechium edule LG13 1 CH_sed_296 2 2 0.000428052
Solanum lycopersicum SL4.0ch04 1 CH_sly_67 4 4 0.00000000000303328
Solanum pennellii Spenn-ch04 1 CH_spe_358 2 2 0.000133437
Solanum tuberosum ST4.03ch04 1 CH_stu_76 4 4 0.00000000000201876
Trochodendron aralioides group4 1 CH_tar_145 3 4 0.000000216254
Theobroma cacao Chromosome_8 1 CH_tca_114 3 3 0.00000000804614
Tarenaya hassleriana NW_010965372.1 1 CH_tha_54 3 3 0.000000146363
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_322 2 2 0.000278772
Vigna mungo CM024072.1 1 CH_vmu_338 2 2 0.000387685
Brassica rapa A07 2 CH_bra_351 2 2 0.00064397
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_66 3 3 0.0000000102821
Camellia sinensis var. sinensis Chr9 2 CH_camsi_649 2 2 0.000137564
Cannabis sativa NC_044370.1 2 CH_cansat_104 3 3 0.0000000258716
Capsicum annuum PGAv.1.6.scaffold1271 2 CH_can_94 3 3 0.0000000102372
Carya illinoinensis Chr08 2 CH_cil_87 4 4 0.000000000000714457
Cucumis melo chr04 2 CH_cme_233 2 2 0.000200133
Corchorus olitorius AWUE01019218.1 2 CH_col_3 6 7 3.35351e-16
Carica papaya supercontig_140 2 CH_cpa_304 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_1566 2 CH_cqu_307 2 2 0.0000473821
Cucumis sativus L. chr3 2 CH_csa_257 2 2 0.000250428
Daucus carota DCARv2_Chr3 2 CH_dca_300 2 2 0.000191333
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_11 6 6 3.43912e-19
Fragaria vesca Fvb2 2 CH_fve_392 2 2 0.000353461
Glycine max Gm06 2 CH_gma_558 2 2 0.000569336
Gossypium raimondii Chr06 2 CH_gra_135 3 3 0.000000150895
Helianthus annuus HanXRQChr09 2 CH_han_23 9 55 8.93306e-20
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_219 3 3 0.000000653919
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_70 5 9 0.00000000000304613
Malus domestica Chr08 2 CH_mdo_282 3 5 0.00000181155
Malus domestica Chr15 2 CH_mdo_89 4 4 0.000000000020614
Nelumbo nucifera chr5 2 CH_nnu_321 2 2 0.000130804
Petunia axillaris Peaxi162Scf00287 2 CH_pax_90 3 3 0.000000148503
Prunus persica Pp01 2 CH_ppe_332 2 2 0.0000745962
Papaver somniferum NC_039364.1 2 CH_pso_576 2 2 0.000337849
Populus trichocarpa Chr05 2 CH_ptr_371 2 2 0.0001734
Phaseolus vulgaris Chr09 2 CH_pvu_352 2 2 0.000220418
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_357 3 6 0.00000166833
Salix brachista GWHAAZH00000005 2 CH_sbr_280 2 2 0.000189042
Sechium edule LG13 2 CH_sed_296 2 2 0.000428052
Solanum lycopersicum SL4.0ch04 2 CH_sly_67 4 4 0.00000000000303328
Solanum pennellii Spenn-ch04 2 CH_spe_358 2 2 0.000133437
Solanum tuberosum ST4.03ch04 2 CH_stu_76 4 4 0.00000000000201876
Trochodendron aralioides group4 2 CH_tar_145 3 4 0.000000216254
Theobroma cacao Chromosome_8 2 CH_tca_114 3 3 0.00000000804614
Tarenaya hassleriana NW_010965372.1 2 CH_tha_54 3 3 0.000000146363
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_322 2 2 0.000278772
Vigna mungo CM024072.1 2 CH_vmu_338 2 2 0.000387685

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001