Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase inhibitor

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-10 1 CH_aar_48 4 10 0.00000000239114
Actinidia chinensis Lachesis_group22 1 CH_ach_168 2 4 0.00032591
Brassica napus C01 1 CH_bna_281 3 6 0.00000123877
Brassica oleracea C1 1 CH_bol_400 2 3 0.000588328
Brassica rapa A01 1 CH_bra_368 2 4 0.000772709
Capsicum annuum PGAv.1.6.scaffold338 1 CH_can_319 2 3 0.000247821
Cucumis melo chr03 1 CH_cme_14 9 22 5.53109e-18
Cucumis sativus L. chr6 1 CH_csa_148 3 5 0.00000365725
Davidia involucrata GWHABJS00000014 1 CH_din_255 2 2 0.0000500125
Eutrema salsugineum scaffold_7 1 CH_esa_243 2 2 0.00022845
Quercus lobata 6 1 CH_qlo_799 2 2 0.000154887
Rhododendron simsii chr04 1 CH_rsi_431 2 2 0.000193592
Tarenaya hassleriana NW_010970490.1 1 CH_tha_62 3 3 0.000000614726
Aethionema arabicum LG-10 2 CH_aar_48 4 10 0.00000000239114
Actinidia chinensis Lachesis_group22 2 CH_ach_168 2 4 0.00032591
Brassica oleracea C1 2 CH_bol_400 2 3 0.000588328
Brassica rapa A01 2 CH_bra_368 2 4 0.000772709
Capsicum annuum PGAv.1.6.scaffold338 2 CH_can_319 2 3 0.000247821
Cucumis melo chr03 2 CH_cme_14 9 22 5.53109e-18
Cucumis sativus L. chr6 2 CH_csa_148 3 5 0.00000365725
Davidia involucrata GWHABJS00000014 2 CH_din_255 2 2 0.0000500125
Eutrema salsugineum scaffold_7 2 CH_esa_243 2 2 0.00022845
Quercus lobata 6 2 CH_qlo_799 2 2 0.000154887
Rhododendron simsii chr04 2 CH_rsi_431 2 2 0.000193592
Tarenaya hassleriana NW_010970490.1 2 CH_tha_62 3 3 0.000000614726

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001