Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.hemicellulose.heteromannan.modification and degradation.endo-beta-1,4-mannanase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR05 | 1 | CH_aox_40 | 4 | 5 | 0.00000000382935 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_420 | 2 | 2 | 0.000802177 |
| Capsicum annuum | PGAv.1.6.scaffold14 | 1 | CH_can_73 | 4 | 4 | 0.000000000213133 |
| Capsella rubella | scaffold_3 | 1 | CH_cru_158 | 3 | 3 | 0.000000449069 |
| Daucus carota | DCARv2_Chr4 | 1 | CH_dca_158 | 3 | 3 | 0.00000277621 |
| Davidia involucrata | GWHABJS00000015 | 1 | CH_din_138 | 3 | 3 | 0.000000315165 |
| Erythranthe guttata | scaffold_11 | 1 | CH_egut_199 | 4 | 18 | 0.000000742132 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_367 | 3 | 5 | 0.0000101878 |
| Lupinus albus | Lalb_Chr16 | 1 | CH_lal_53 | 4 | 4 | 0.000000000434141 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_100 | 4 | 5 | 0.000000000256653 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_303 | 3 | 8 | 0.0000326641 |
| Marchantia polymorpha | scaffold_110 | 1 | CH_mpo_129 | 2 | 3 | 0.000993889 |
| Medicago truncatula | chr1 | 1 | CH_mtr_147 | 5 | 11 | 0.0000000000430808 |
| Petunia axillaris | Peaxi162Scf00276 | 1 | CH_pax_164 | 3 | 5 | 0.0000337606 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_98 | 3 | 4 | 0.0000000653034 |
| Striga asiatica | scaffold118 | 1 | CH_sas_36 | 3 | 5 | 0.00000703708 |
| Salvia bowleyana | GWHASIU00000001 | 1 | CH_sbo_164 | 4 | 18 | 0.000000284741 |
| Salix brachista | GWHAAZH00000013 | 1 | CH_sbr_320 | 3 | 16 | 0.000279555 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_572 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_265 | 3 | 5 | 0.000023499 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_204 | 3 | 4 | 0.00000339434 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_117 | 5 | 22 | 0.00000000271716 |
| Tripterygium wilfordii | NC_052248.1 | 1 | CH_twi_58 | 4 | 5 | 0.000000000327483 |
| Vitis vinifera | chr18 | 1 | CH_vvi_41 | 6 | 6 | 9.83403e-17 |
| Aquilegia oxysepala | CHR05 | 2 | CH_aox_40 | 4 | 5 | 0.00000000382935 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_420 | 2 | 2 | 0.000802177 |
| Capsicum annuum | PGAv.1.6.scaffold14 | 2 | CH_can_73 | 4 | 4 | 0.000000000213133 |
| Capsella rubella | scaffold_3 | 2 | CH_cru_158 | 3 | 3 | 0.000000449069 |
| Daucus carota | DCARv2_Chr4 | 2 | CH_dca_158 | 3 | 3 | 0.00000277621 |
| Davidia involucrata | GWHABJS00000015 | 2 | CH_din_138 | 3 | 3 | 0.000000315165 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_506 | 3 | 3 | 0.000000847827 |
| Erythranthe guttata | scaffold_11 | 2 | CH_egut_199 | 4 | 18 | 0.000000742132 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_367 | 3 | 5 | 0.0000101878 |
| Lupinus albus | Lalb_Chr16 | 2 | CH_lal_53 | 4 | 4 | 0.000000000434141 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_100 | 4 | 5 | 0.000000000256653 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_303 | 3 | 8 | 0.0000326641 |
| Marchantia polymorpha | scaffold_110 | 2 | CH_mpo_129 | 2 | 3 | 0.000993889 |
| Petunia axillaris | Peaxi162Scf00276 | 2 | CH_pax_164 | 3 | 5 | 0.0000337606 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_98 | 3 | 4 | 0.0000000653034 |
| Striga asiatica | scaffold118 | 2 | CH_sas_36 | 3 | 5 | 0.00000703708 |
| Salvia bowleyana | GWHASIU00000001 | 2 | CH_sbo_164 | 4 | 18 | 0.000000284741 |
| Salix brachista | GWHAAZH00000013 | 2 | CH_sbr_320 | 3 | 16 | 0.000279555 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_572 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_265 | 3 | 5 | 0.000023499 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_204 | 3 | 4 | 0.00000339434 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_117 | 5 | 22 | 0.00000000271716 |
| Tripterygium wilfordii | NC_052248.1 | 2 | CH_twi_58 | 4 | 5 | 0.000000000327483 |
| Vitis vinifera | chr18 | 2 | CH_vvi_41 | 6 | 6 | 9.83403e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |