Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.heteromannan.biosynthesis.galactoglucomannan galactosyltransferase (MUCI10)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group25 1 CH_ach_234 2 2 0.000543213
Avicennia marina ScioBoG_3895_HRSCAF_3912 1 CH_ama_88 2 2 0.000258665
Camellia sinensis var. sinensis Chr2 1 CH_camsi_152 4 6 0.000000000546595
Camellia sinensis var. sinensis Chr1 1 CH_camsi_58 5 6 0.000000000000025069
Capsicum annuum PGAv.1.6.scaffold1075 1 CH_can_272 2 2 0.0000826105
Corylus avellana 11 1 CH_cav_249 2 2 0.0000766695
Coffea canephora chr7 1 CH_ccan_27 4 16 0.000000000000316331
Carpinus fangiana Cfa01 1 CH_cfa_228 2 2 0.0000757346
Daucus carota DCARv2_Chr3 1 CH_dca_141 3 7 0.000000854027
Davidia involucrata GWHABJS00000021 1 CH_din_333 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_389 2 2 0.000269233
Helianthus annuus HanXRQChr09 1 CH_han_640 2 2 0.000386429
Lupinus albus Lalb_Chr09 1 CH_lal_309 2 2 0.000314895
Malus domestica Chr02 1 CH_mdo_679 2 2 0.000568817
Medicago truncatula chr4 1 CH_mtr_609 2 2 0.000123259
Petunia axillaris Peaxi162Scf00548 1 CH_pax_292 2 4 0.000422104
Prunus persica Pp06 1 CH_ppe_406 2 2 0.000223789
Pisum sativum chr4LG4 1 CH_psa_282 2 2 0.00015649
Quercus lobata 6 1 CH_qlo_798 2 2 0.000154887
Rhododendron simsii chr10 1 CH_rsi_17 10 13 2.59828e-30
Striga asiatica scaffold15 1 CH_sas_8 3 3 0.00000000586652
Solanum pennellii Spenn-ch02 1 CH_spe_357 2 2 0.000133437
Solanum tuberosum ST4.03ch02 1 CH_stu_461 2 2 0.000153736
Trifolium pratense Tp57577_TGAC_v2_LG5 1 CH_tpr_73 3 4 0.0000000343805
Zea mays 4 1 CH_zma_242 2 3 0.000460162
Actinidia chinensis Lachesis_group25 2 CH_ach_234 2 2 0.000543213
Avicennia marina ScioBoG_3895_HRSCAF_3912 2 CH_ama_88 2 2 0.000258665
Camellia sinensis var. sinensis Chr2 2 CH_camsi_152 4 6 0.000000000546595
Camellia sinensis var. sinensis Chr1 2 CH_camsi_58 5 6 0.000000000000025069
Capsicum annuum PGAv.1.6.scaffold1075 2 CH_can_272 2 2 0.0000826105
Corylus avellana 11 2 CH_cav_249 2 2 0.0000766695
Coffea canephora chr7 2 CH_ccan_27 4 16 0.000000000000316331
Carpinus fangiana Cfa01 2 CH_cfa_228 2 2 0.0000757346
Daucus carota DCARv2_Chr3 2 CH_dca_141 3 7 0.000000854027
Davidia involucrata GWHABJS00000021 2 CH_din_333 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_389 2 2 0.000269233
Helianthus annuus HanXRQChr09 2 CH_han_640 2 2 0.000386429
Lupinus albus Lalb_Chr09 2 CH_lal_309 2 2 0.000314895
Lotus japonicus chr4 2 CH_lja_318 2 2 0.000214523
Malus domestica Chr02 2 CH_mdo_679 2 2 0.000568817
Petunia axillaris Peaxi162Scf00548 2 CH_pax_292 2 4 0.000422104
Prunus persica Pp06 2 CH_ppe_406 2 2 0.000223789
Pisum sativum chr4LG4 2 CH_psa_282 2 2 0.00015649
Quercus lobata 6 2 CH_qlo_798 2 2 0.000154887
Rhododendron simsii chr10 2 CH_rsi_17 10 13 2.59828e-30
Striga asiatica scaffold15 2 CH_sas_8 3 3 0.00000000586652
Solanum pennellii Spenn-ch02 2 CH_spe_357 2 2 0.000133437
Solanum tuberosum ST4.03ch02 2 CH_stu_461 2 2 0.000153736
Trifolium pratense Tp57577_TGAC_v2_LG5 2 CH_tpr_73 3 4 0.0000000343805
Zea mays 4 2 CH_zma_242 2 3 0.000460162

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001