Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.xylan.modification and degradation.endo-beta-1,4-xylanase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carica papaya supercontig_160 1 CH_cpa_204 2 2 0.0000950661
Durio zibethinus NW_019167949.1 1 CH_dzi_230 2 2 0.000139047
Gossypium raimondii Chr09 1 CH_gra_300 2 2 0.000160832
Manihot esculenta Chromosome05 1 CH_mes_149 3 3 0.0000000223729
Oryza sativa ssp. japonica chr01 1 CH_osa_400 2 3 0.000950562
Punica granatum NC_045133.1 1 CH_pgr_283 2 2 0.000225107
Populus trichocarpa Chr02 1 CH_ptr_304 2 2 0.0000578001
Rhododendron simsii chr06 1 CH_rsi_168 3 5 0.0000000624612
Salix brachista GWHAAZH00000002 1 CH_sbr_221 2 2 0.000063014
Solanum tuberosum ST4.03ch04 1 CH_stu_460 2 2 0.000153736
Trochodendron aralioides group5 1 CH_tar_477 2 3 0.000540303
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_309 2 2 0.000227092
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_237 2 2 0.0000929238
Carica papaya supercontig_160 2 CH_cpa_204 2 2 0.0000950661
Durio zibethinus NW_019167949.1 2 CH_dzi_230 2 2 0.000139047
Eucalyptus grandis Chr06 2 CH_egr_774 2 2 0.000175582
Gossypium hirsutum A05 2 CH_ghi_686 2 2 0.000400523
Gossypium hirsutum D05 2 CH_ghi_687 2 2 0.000400523
Gossypium raimondii Chr09 2 CH_gra_300 2 2 0.000160832
Manihot esculenta Chromosome05 2 CH_mes_149 3 3 0.0000000223729
Oryza sativa ssp. japonica chr01 2 CH_osa_400 2 3 0.000950562
Punica granatum NC_045133.1 2 CH_pgr_283 2 2 0.000225107
Populus trichocarpa Chr02 2 CH_ptr_304 2 2 0.0000578001
Rhododendron simsii chr06 2 CH_rsi_168 3 5 0.0000000624612
Salix brachista GWHAAZH00000002 2 CH_sbr_221 2 2 0.000063014
Solanum tuberosum ST4.03ch04 2 CH_stu_460 2 2 0.000153736
Trochodendron aralioides group5 2 CH_tar_477 2 3 0.000540303
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_309 2 2 0.000227092
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_237 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001