Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.xylan.modification and degradation.xylan O-acetyltransferase (XOAT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_51 4 4 0.000000000132449
Arabidopsis lyrata scaffold_4 1 CH_aly_150 3 3 0.000000784211
Avicennia marina ScioBoG_25048_HRSCAF_25167 1 CH_ama_47 3 8 0.0000523958
Aquilegia oxysepala CHR02 1 CH_aox_190 4 68 0.000087281
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 1 CH_arhy_475 4 63 0.000112987
Arabidopsis thaliana Chr2 1 CH_ath_412 3 34 0.000617351
Amborella trichopoda AmTr_v1.0_scaffold00023 1 CH_atr_109 3 4 0.000000757232
Brassica carinata ChrB01 1 CH_bca_1072 3 16 0.000678277
Camellia sinensis var. sinensis Chr4 1 CH_camsi_12 11 32 2.78169e-25
Camellia sinensis var. sinensis Chr10 1 CH_camsi_489 3 4 0.0000223351
Capsicum annuum PGAv.1.6.scaffold203 1 CH_can_167 3 3 0.000000859922
Coffea canephora chr6 1 CH_ccan_104 3 18 0.00000124309
Cardamine hirsuta Chr4 1 CH_chi_166 4 26 0.00000309692
Cucumis melo chr08 1 CH_cme_321 3 29 0.000850809
Corchorus olitorius AWUE01015427.1 1 CH_col_114 2 2 0.000876296
Carica papaya supercontig_19 1 CH_cpa_104 3 4 0.00000303608
Chenopodium quinoa C_Quinoa_Scaffold_3973 1 CH_cqu_205 3 3 0.000000963157
Chenopodium quinoa C_Quinoa_Scaffold_2000 1 CH_cqu_206 3 3 0.000000963157
Cucumis sativus L. chr4 1 CH_csa_291 3 25 0.000479395
Daucus carota DCARv2_Chr4 1 CH_dca_133 3 3 0.000000512531
Davidia involucrata GWHABJS00000015 1 CH_din_216 4 27 0.0000155738
Davidia involucrata GWHABJS00000012 1 CH_din_47 5 10 0.0000000000730793
Durio zibethinus NW_019167926.1 1 CH_dzi_127 3 3 0.00000117295
Durio zibethinus NW_019167937.1 1 CH_dzi_170 3 5 0.0000117245
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_37 5 6 0.000000000000234793
Erythranthe guttata scaffold_10 1 CH_egut_13 8 9 3.96156e-22
Fragaria vesca Fvb6 1 CH_fve_475 2 2 0.000883652
Gossypium hirsutum A05 1 CH_ghi_196 4 5 0.0000000168158
Gossypium hirsutum D04 1 CH_ghi_288 4 9 0.000000423155
Glycine max Gm03 1 CH_gma_346 4 48 0.0000575839
Gossypium raimondii Chr12 1 CH_gra_106 4 5 0.00000000707065
Gossypium raimondii Chr12 1 CH_gra_263 4 35 0.0000733207
Helianthus annuus HanXRQChr10 1 CH_han_204 4 7 0.0000000185283
Lonicera japonica GWHAAZE00000002 1 CH_lonja_239 3 3 0.00000064559
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_302 3 5 0.0000221813
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_47 6 9 0.00000000000000542776
Manihot esculenta Chromosome10 1 CH_mes_111 4 4 0.000000000488432
Olea europaea chr1 1 CH_oeu_28 5 15 0.000000000365294
Punica granatum NC_045131.1 1 CH_pgr_68 4 4 0.000000000906315
Papaver somniferum NW_020628818.1 1 CH_pso_304 4 14 0.00000107693
Papaver somniferum NC_039366.1 1 CH_pso_442 3 6 0.0000683591
Papaver somniferum NC_039366.1 1 CH_pso_56 6 9 0.0000000000000080609
Populus trichocarpa Chr10 1 CH_ptr_256 3 4 0.00000573166
Populus trichocarpa Chr08 1 CH_ptr_268 3 5 0.0000143256
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_804 2 2 0.00083717
Rhododendron simsii chr10 1 CH_rsi_573 3 13 0.00081024
Rhododendron simsii chr05 1 CH_rsi_66 5 5 0.000000000000390631
Salvia bowleyana GWHASIU00000006 1 CH_sbo_59 7 31 0.000000000000630489
Salvia bowleyana GWHASIU00000003 1 CH_sbo_64 8 77 0.0000000000019459
Simmondsia chinensis GWHAASQ00000022 1 CH_sci_2 10 11 5.51223e-29
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_557 3 3 0.000000299026
Solanum lycopersicum SL4.0ch05 1 CH_sly_191 4 12 0.00000071279
Schrenkiella parvula ch4-6 1 CH_spa_268 3 17 0.000529546
Theobroma cacao Chromosome_10 1 CH_tca_139 5 47 0.000000041438
Tripterygium wilfordii NC_052245.1 1 CH_twi_84 5 38 0.0000000286274
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_183 3 4 0.0000148122
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_76 4 4 0.00000000172135
Acer truncatum chr12 2 CH_acertr_51 4 4 0.000000000132449
Arabidopsis lyrata scaffold_4 2 CH_aly_150 3 3 0.000000784211
Avicennia marina ScioBoG_25048_HRSCAF_25167 2 CH_ama_47 3 8 0.0000523958
Aquilegia oxysepala CHR02 2 CH_aox_190 4 68 0.000087281
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 2 CH_arhy_475 4 63 0.000112987
Arabidopsis thaliana Chr2 2 CH_ath_412 3 34 0.000617351
Amborella trichopoda AmTr_v1.0_scaffold00023 2 CH_atr_109 3 4 0.000000757232
Brassica carinata ChrB01 2 CH_bca_1072 3 16 0.000678277
Camellia sinensis var. sinensis Chr4 2 CH_camsi_12 11 32 2.78169e-25
Camellia sinensis var. sinensis Chr10 2 CH_camsi_489 3 4 0.0000223351
Capsicum annuum PGAv.1.6.scaffold203 2 CH_can_167 3 3 0.000000859922
Coffea canephora chr6 2 CH_ccan_104 3 18 0.00000124309
Cardamine hirsuta Chr4 2 CH_chi_166 4 26 0.00000309692
Cucumis melo chr08 2 CH_cme_321 3 29 0.000850809
Corchorus olitorius AWUE01015427.1 2 CH_col_114 2 2 0.000876296
Carica papaya supercontig_19 2 CH_cpa_104 3 4 0.00000303608
Chenopodium quinoa C_Quinoa_Scaffold_3973 2 CH_cqu_205 3 3 0.000000963157
Chenopodium quinoa C_Quinoa_Scaffold_2000 2 CH_cqu_206 3 3 0.000000963157
Cucumis sativus L. chr4 2 CH_csa_291 3 25 0.000479395
Daucus carota DCARv2_Chr4 2 CH_dca_133 3 3 0.000000512531
Davidia involucrata GWHABJS00000015 2 CH_din_216 4 27 0.0000155738
Davidia involucrata GWHABJS00000012 2 CH_din_47 5 10 0.0000000000730793
Durio zibethinus NW_019167926.1 2 CH_dzi_127 3 3 0.00000117295
Durio zibethinus NW_019167937.1 2 CH_dzi_170 3 5 0.0000117245
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_37 5 6 0.000000000000234793
Eucalyptus grandis Chr11 2 CH_egr_295 4 4 0.000000000430075
Erythranthe guttata scaffold_10 2 CH_egut_13 8 9 3.96156e-22
Fragaria vesca Fvb6 2 CH_fve_475 2 2 0.000883652
Gossypium hirsutum A05 2 CH_ghi_196 4 5 0.0000000168158
Gossypium hirsutum D04 2 CH_ghi_288 4 9 0.000000423155
Gossypium hirsutum D04 2 CH_ghi_584 4 36 0.000195937
Gossypium hirsutum A04 2 CH_ghi_586 4 37 0.000219609
Glycine max Gm03 2 CH_gma_346 4 48 0.0000575839
Gossypium raimondii Chr12 2 CH_gra_106 4 5 0.00000000707065
Gossypium raimondii Chr12 2 CH_gra_263 4 35 0.0000733207
Helianthus annuus HanXRQChr10 2 CH_han_204 4 7 0.0000000185283
Lonicera japonica GWHAAZE00000002 2 CH_lonja_239 3 3 0.00000064559
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_302 3 5 0.0000221813
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_47 6 9 0.00000000000000542776
Manihot esculenta Chromosome10 2 CH_mes_111 4 4 0.000000000488432
Olea europaea chr1 2 CH_oeu_28 5 15 0.000000000365294
Punica granatum NC_045131.1 2 CH_pgr_68 4 4 0.000000000906315
Papaver somniferum NW_020628818.1 2 CH_pso_304 4 14 0.00000107693
Papaver somniferum NC_039366.1 2 CH_pso_442 3 6 0.0000683591
Papaver somniferum NC_039366.1 2 CH_pso_56 6 9 0.0000000000000080609
Populus trichocarpa Chr10 2 CH_ptr_256 3 4 0.00000573166
Populus trichocarpa Chr08 2 CH_ptr_268 3 5 0.0000143256
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_804 2 2 0.00083717
Rhododendron simsii chr10 2 CH_rsi_573 3 13 0.00081024
Rhododendron simsii chr05 2 CH_rsi_66 5 5 0.000000000000390631
Salvia bowleyana GWHASIU00000006 2 CH_sbo_59 7 31 0.000000000000630489
Salvia bowleyana GWHASIU00000003 2 CH_sbo_64 8 77 0.0000000000019459
Simmondsia chinensis GWHAASQ00000022 2 CH_sci_2 10 11 5.51223e-29
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_557 3 3 0.000000299026
Solanum lycopersicum SL4.0ch05 2 CH_sly_191 4 12 0.00000071279
Schrenkiella parvula ch4-6 2 CH_spa_268 3 17 0.000529546
Theobroma cacao Chromosome_10 2 CH_tca_139 5 47 0.000000041438
Tripterygium wilfordii NC_052245.1 2 CH_twi_84 5 38 0.0000000286274
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_183 3 4 0.0000148122
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_76 4 4 0.00000000172135

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001