Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.xylan.biosynthesis.glucuronosyltransferase activities.glucuronosyltransferase (GUX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR02 1 CH_aox_335 2 2 0.000801989
Camellia sinensis var. sinensis Chr9 1 CH_camsi_420 3 6 0.00000529681
Capsicum annuum PGAv.1.6.scaffold371 1 CH_can_145 3 3 0.000000358301
Capsicum annuum PGAv.1.6.scaffold1034 1 CH_can_146 3 3 0.000000358301
Cardamine hirsuta Chr2 1 CH_chi_408 2 2 0.000691204
Chenopodium quinoa C_Quinoa_Scaffold_2081 1 CH_cqu_128 4 8 0.0000000223438
Petunia axillaris Peaxi162Scf00252 1 CH_pax_341 2 3 0.000703556
Prunus persica Pp08 1 CH_ppe_448 2 3 0.000447577
Pisum sativum chr3LG5 1 CH_psa_126 3 4 0.000000326504
Rhododendron simsii chr10 1 CH_rsi_483 2 2 0.000387184
Salvia bowleyana GWHASIU00000003 1 CH_sbo_153 3 3 0.000000173889
Simmondsia chinensis GWHAASQ00000026 1 CH_sci_297 2 2 0.000851426
Solanum lycopersicum SL4.0ch04 1 CH_sly_541 2 2 0.000880411
Solanum lycopersicum SL4.0ch01 1 CH_sly_542 2 2 0.000880411
Selaginella moellendorffii scaffold_0 1 CH_smo_115 2 2 0.000280112
Solanum pennellii Spenn-ch01 1 CH_spe_498 2 2 0.000667186
Solanum pennellii Spenn-ch04 1 CH_spe_499 2 2 0.000667186
Solanum tuberosum ST4.03ch01 1 CH_stu_556 2 2 0.000512453
Solanum tuberosum ST4.03ch04 1 CH_stu_557 2 2 0.000512453
Trochodendron aralioides group17 1 CH_tar_129 3 3 0.000000108135
Theobroma cacao Chromosome_5 1 CH_tca_429 2 2 0.000732386
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_359 2 2 0.000557543
Vanilla planifolia CM028159.1 1 CH_vpl_283 3 20 0.000325939
Aquilegia oxysepala CHR02 2 CH_aox_335 2 2 0.000801989
Camellia sinensis var. sinensis Chr9 2 CH_camsi_420 3 6 0.00000529681
Capsicum annuum PGAv.1.6.scaffold371 2 CH_can_145 3 3 0.000000358301
Capsicum annuum PGAv.1.6.scaffold1034 2 CH_can_146 3 3 0.000000358301
Cardamine hirsuta Chr2 2 CH_chi_408 2 2 0.000691204
Chenopodium quinoa C_Quinoa_Scaffold_2081 2 CH_cqu_128 4 8 0.0000000223438
Petunia axillaris Peaxi162Scf00252 2 CH_pax_341 2 3 0.000703556
Prunus persica Pp08 2 CH_ppe_448 2 3 0.000447577
Pisum sativum chr3LG5 2 CH_psa_126 3 4 0.000000326504
Rhododendron simsii chr10 2 CH_rsi_483 2 2 0.000387184
Salvia bowleyana GWHASIU00000003 2 CH_sbo_153 3 3 0.000000173889
Simmondsia chinensis GWHAASQ00000026 2 CH_sci_297 2 2 0.000851426
Solanum lycopersicum SL4.0ch04 2 CH_sly_541 2 2 0.000880411
Solanum lycopersicum SL4.0ch01 2 CH_sly_542 2 2 0.000880411
Selaginella moellendorffii scaffold_0 2 CH_smo_115 2 2 0.000280112
Solanum pennellii Spenn-ch01 2 CH_spe_498 2 2 0.000667186
Solanum pennellii Spenn-ch04 2 CH_spe_499 2 2 0.000667186
Solanum tuberosum ST4.03ch01 2 CH_stu_556 2 2 0.000512453
Solanum tuberosum ST4.03ch04 2 CH_stu_557 2 2 0.000512453
Trochodendron aralioides group17 2 CH_tar_129 3 3 0.000000108135
Theobroma cacao Chromosome_5 2 CH_tca_429 2 2 0.000732386
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_359 2 2 0.000557543
Vanilla planifolia CM028159.1 2 CH_vpl_283 3 20 0.000325939

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001