Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.xyloglucan.modification and degradation.alpha-L-fucosidase (FXG)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_102 3 4 0.000000029819
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 1 CH_amhyb_135 2 2 0.0000841751
Aquilegia oxysepala CHR05 1 CH_aox_209 2 3 0.000240587
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_288 2 5 0.000827815
Cannabis sativa NC_044373.1 1 CH_cansat_91 3 3 0.00000000646789
Citrus clementina scaffold_5 1 CH_ccl_446 2 2 0.000492187
Citrus clementina scaffold_4 1 CH_ccl_447 2 2 0.000492187
Carya illinoinensis Chr05 1 CH_cil_126 4 5 0.0000000000535799
Carica papaya supercontig_33 1 CH_cpa_303 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_1214 1 CH_cqu_60 4 4 0.0000000000223406
Chenopodium quinoa C_Quinoa_Scaffold_4119 1 CH_cqu_74 4 5 0.000000000111692
Davidia involucrata GWHABJS00000002 1 CH_din_122 3 3 0.0000000750394
Eucalyptus grandis Chr02 1 CH_egr_84 6 6 1.54564e-20
Fragaria x ananassa Fvb2-2 1 CH_fan_133 3 6 0.000000102709
Fragaria vesca Fvb4 1 CH_fve_391 2 2 0.000353461
Gossypium raimondii Chr05 1 CH_gra_410 2 2 0.000536107
Helianthus annuus HanXRQChr08 1 CH_han_638 2 2 0.000386429
Helianthus annuus HanXRQChr12 1 CH_han_639 2 2 0.000386429
Hydrangea macrophylla Hma1.2p1_0186F.1 1 CH_hma_347 2 2 0.000333259
Lupinus albus Lalb_Chr10 1 CH_lal_431 2 3 0.000944626
Lonicera japonica GWHAAZE00000006 1 CH_lonja_373 2 2 0.0000598874
Magnolia biondii Chr14 1 CH_mbi_147 3 5 0.0000000566069
Malus domestica Chr16 1 CH_mdo_719 2 3 0.000682551
Manihot esculenta Chromosome02 1 CH_mes_172 3 3 0.000000111865
Medicago truncatula chr1 1 CH_mtr_211 4 15 0.00000000425803
Olea europaea chr1 1 CH_oeu_165 2 2 0.0000533789
Oryza sativa ssp. japonica chr07 1 CH_osa_209 2 2 0.0000528123
Punica granatum NC_045129.1 1 CH_pgr_208 2 2 0.0000750356
Prunus persica Pp01 1 CH_ppe_22 7 7 4.88763e-22
Papaver somniferum NC_039361.1 1 CH_pso_477 2 2 0.00013514
Papaver somniferum NC_039365.1 1 CH_pso_478 2 2 0.00013514
Populus trichocarpa Chr02 1 CH_ptr_538 2 2 0.000867002
Quercus lobata 9 1 CH_qlo_1047 2 3 0.000929264
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_365 3 9 0.00000200188
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_728 2 2 0.000398653
Salvia bowleyana GWHASIU00000004 1 CH_sbo_282 2 2 0.000045498
Solanum lycopersicum SL4.0ch05 1 CH_sly_327 2 2 0.0000586941
Solanum pennellii Spenn-ch05 1 CH_spe_283 2 2 0.000044479
Solanum tuberosum ST4.03ch05 1 CH_stu_379 2 2 0.0000512453
Selenicereus undatus Scaffold_19641 1 CH_sun_122 2 2 0.0000726639
Trochodendron aralioides group5 1 CH_tar_115 3 3 0.0000000540676
Theobroma cacao Chromosome_2 1 CH_tca_342 2 2 0.000219716
Vitis vinifera chr1 1 CH_vvi_156 3 3 0.000000173574
Acer truncatum chr11 2 CH_acertr_102 3 4 0.000000029819
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 2 CH_amhyb_135 2 2 0.0000841751
Aquilegia oxysepala CHR05 2 CH_aox_209 2 3 0.000240587
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_288 2 5 0.000827815
Cannabis sativa NC_044373.1 2 CH_cansat_91 3 3 0.00000000646789
Citrus clementina scaffold_5 2 CH_ccl_446 2 2 0.000492187
Citrus clementina scaffold_4 2 CH_ccl_447 2 2 0.000492187
Carya illinoinensis Chr05 2 CH_cil_126 4 5 0.0000000000535799
Carica papaya supercontig_33 2 CH_cpa_303 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_1214 2 CH_cqu_60 4 4 0.0000000000223406
Chenopodium quinoa C_Quinoa_Scaffold_4119 2 CH_cqu_74 4 5 0.000000000111692
Davidia involucrata GWHABJS00000002 2 CH_din_122 3 3 0.0000000750394
Eucalyptus grandis Chr02 2 CH_egr_84 6 6 1.54564e-20
Fragaria x ananassa Fvb2-2 2 CH_fan_133 3 6 0.000000102709
Fragaria vesca Fvb4 2 CH_fve_391 2 2 0.000353461
Gossypium hirsutum A03 2 CH_ghi_818 2 2 0.000747644
Gossypium hirsutum D02 2 CH_ghi_819 2 2 0.000747644
Gossypium raimondii Chr05 2 CH_gra_410 2 2 0.000536107
Helianthus annuus HanXRQChr08 2 CH_han_638 2 2 0.000386429
Helianthus annuus HanXRQChr12 2 CH_han_639 2 2 0.000386429
Hydrangea macrophylla Hma1.2p1_0186F.1 2 CH_hma_347 2 2 0.000333259
Lupinus albus Lalb_Chr10 2 CH_lal_431 2 3 0.000944626
Lonicera japonica GWHAAZE00000006 2 CH_lonja_373 2 2 0.0000598874
Magnolia biondii Chr14 2 CH_mbi_147 3 5 0.0000000566069
Malus domestica Chr16 2 CH_mdo_719 2 3 0.000682551
Manihot esculenta Chromosome02 2 CH_mes_172 3 3 0.000000111865
Olea europaea chr1 2 CH_oeu_165 2 2 0.0000533789
Oryza sativa ssp. japonica chr07 2 CH_osa_209 2 2 0.0000528123
Punica granatum NC_045129.1 2 CH_pgr_208 2 2 0.0000750356
Prunus persica Pp01 2 CH_ppe_22 7 7 4.88763e-22
Papaver somniferum NC_039361.1 2 CH_pso_477 2 2 0.00013514
Papaver somniferum NC_039365.1 2 CH_pso_478 2 2 0.00013514
Populus trichocarpa Chr02 2 CH_ptr_538 2 2 0.000867002
Quercus lobata 9 2 CH_qlo_1047 2 3 0.000929264
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_365 3 9 0.00000200188
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_728 2 2 0.000398653
Salvia bowleyana GWHASIU00000004 2 CH_sbo_282 2 2 0.000045498
Solanum lycopersicum SL4.0ch05 2 CH_sly_327 2 2 0.0000586941
Solanum pennellii Spenn-ch05 2 CH_spe_283 2 2 0.000044479
Solanum tuberosum ST4.03ch05 2 CH_stu_379 2 2 0.0000512453
Selenicereus undatus Scaffold_19641 2 CH_sun_122 2 2 0.0000726639
Trochodendron aralioides group5 2 CH_tar_115 3 3 0.0000000540676
Theobroma cacao Chromosome_2 2 CH_tca_342 2 2 0.000219716
Vitis vinifera chr1 2 CH_vvi_156 3 3 0.000000173574

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001