Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.hemicellulose.xyloglucan.modification and degradation.1,2-alpha-fucosidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_35 4 5 0.00000000000525574
Camellia sinensis var. sinensis Chr3 1 CH_camsi_24 7 19 3.68903e-20
Citrus clementina scaffold_8 1 CH_ccl_302 2 2 0.0000820311
Carpinus fangiana Cfa02 1 CH_cfa_227 2 2 0.0000757346
Carya illinoinensis Chr05 1 CH_cil_351 2 2 0.0000619828
Corchorus olitorius AWUE01021134.1 1 CH_col_69 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1257 1 CH_cqu_424 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_4383 1 CH_cqu_425 2 2 0.000284293
Daucus carota DCARv2_Chr1 1 CH_dca_299 2 2 0.000191333
Glycine max Gm20 1 CH_gma_435 2 2 0.000227734
Gossypium raimondii Chr08 1 CH_gra_282 2 3 0.000160828
Lonicera japonica GWHAAZE00000005 1 CH_lonja_155 3 3 0.00000000537991
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_392 2 2 0.000154202
Magnolia biondii Chr16 1 CH_mbi_451 2 3 0.000145698
Malus domestica Chr10 1 CH_mdo_424 2 3 0.000113761
Manihot esculenta Chromosome10 1 CH_mes_356 2 2 0.000183189
Oryza sativa ssp. japonica chr10 1 CH_osa_297 2 4 0.000316857
Punica granatum NC_045128.1 1 CH_pgr_207 2 2 0.0000750356
Populus trichocarpa Chr01 1 CH_ptr_435 2 2 0.000346801
Quercus lobata 11 1 CH_qlo_661 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_715 2 5 0.000398629
Salix brachista GWHAAZH00000009 1 CH_sbr_332 2 2 0.000378084
Sequoiadendron giganteum chr4 1 CH_sgi_244 4 5 0.00000000000173422
Trochodendron aralioides group11 1 CH_tar_260 2 2 0.0000600366
Theobroma cacao Chromosome_2 1 CH_tca_283 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_226 2 2 0.0000756974
Acer truncatum chr5 2 CH_acertr_35 4 5 0.00000000000525574
Camellia sinensis var. sinensis Chr3 2 CH_camsi_24 7 19 3.68903e-20
Citrus clementina scaffold_8 2 CH_ccl_302 2 2 0.0000820311
Carpinus fangiana Cfa02 2 CH_cfa_227 2 2 0.0000757346
Carya illinoinensis Chr05 2 CH_cil_351 2 2 0.0000619828
Corchorus olitorius AWUE01021134.1 2 CH_col_69 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1257 2 CH_cqu_424 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_4383 2 CH_cqu_425 2 2 0.000284293
Daucus carota DCARv2_Chr1 2 CH_dca_299 2 2 0.000191333
Eucalyptus grandis Chr09 2 CH_egr_344 3 3 0.00000000513834
Gossypium hirsutum A12 2 CH_ghi_551 2 2 0.000160209
Gossypium hirsutum D12 2 CH_ghi_754 2 3 0.000480613
Glycine max Gm20 2 CH_gma_435 2 2 0.000227734
Gossypium raimondii Chr08 2 CH_gra_282 2 3 0.000160828
Lonicera japonica GWHAAZE00000005 2 CH_lonja_155 3 3 0.00000000537991
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_392 2 2 0.000154202
Magnolia biondii Chr16 2 CH_mbi_451 2 3 0.000145698
Malus domestica Chr10 2 CH_mdo_424 2 3 0.000113761
Manihot esculenta Chromosome10 2 CH_mes_356 2 2 0.000183189
Oryza sativa ssp. japonica chr10 2 CH_osa_297 2 4 0.000316857
Punica granatum NC_045128.1 2 CH_pgr_207 2 2 0.0000750356
Populus trichocarpa Chr01 2 CH_ptr_435 2 2 0.000346801
Quercus lobata 11 2 CH_qlo_661 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_715 2 5 0.000398629
Salix brachista GWHAAZH00000009 2 CH_sbr_332 2 2 0.000378084
Sequoiadendron giganteum chr4 2 CH_sgi_244 4 5 0.00000000000173422
Trochodendron aralioides group11 2 CH_tar_260 2 2 0.0000600366
Theobroma cacao Chromosome_2 2 CH_tca_283 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_226 2 2 0.0000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001