Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.Casparian strip formation.lignin polymerization scaffold protein (CASP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_3895_HRSCAF_3912 | 1 | CH_ama_128 | 2 | 2 | 0.000517331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 1 | CH_arhy_245 | 3 | 3 | 0.000000221838 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 1 | CH_arhy_246 | 3 | 3 | 0.000000221838 |
| Cicer arietinum L. | Ca_LG7_v3 | 1 | CH_car_179 | 2 | 2 | 0.0000778301 |
| Gossypium hirsutum | D08 | 1 | CH_ghi_162 | 4 | 5 | 0.00000000110669 |
| Gossypium hirsutum | A08 | 1 | CH_ghi_72 | 5 | 5 | 0.0000000000000443351 |
| Glycine max | Gm10 | 1 | CH_gma_83 | 4 | 4 | 0.000000000164214 |
| Glycine max | Gm02 | 1 | CH_gma_84 | 4 | 4 | 0.000000000164214 |
| Gossypium raimondii | Chr04 | 1 | CH_gra_36 | 5 | 5 | 0.0000000000000286272 |
| Malus domestica | Chr12 | 1 | CH_mdo_757 | 2 | 2 | 0.000796344 |
| Medicago truncatula | chr1 | 1 | CH_mtr_326 | 3 | 4 | 0.000000354476 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_106 | 3 | 3 | 0.000000081633 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_491 | 2 | 2 | 0.00013514 |
| Populus trichocarpa | Chr16 | 1 | CH_ptr_550 | 2 | 2 | 0.000867002 |
| Phaseolus vulgaris | Chr07 | 1 | CH_pvu_428 | 2 | 2 | 0.000440836 |
| Salix brachista | GWHAAZH00000016 | 1 | CH_sbr_146 | 4 | 31 | 0.00000164758 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_1382 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_514 | 3 | 3 | 0.0000000711967 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 1 | CH_tpr_142 | 3 | 5 | 0.00000171867 |
| Tripterygium wilfordii | NC_052236.1 | 1 | CH_twi_321 | 2 | 2 | 0.00083626 |
| Avicennia marina | ScioBoG_3895_HRSCAF_3912 | 2 | CH_ama_128 | 2 | 2 | 0.000517331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 2 | CH_arhy_245 | 3 | 3 | 0.000000221838 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 2 | CH_arhy_246 | 3 | 3 | 0.000000221838 |
| Cicer arietinum L. | Ca_LG7_v3 | 2 | CH_car_179 | 2 | 2 | 0.0000778301 |
| Gossypium hirsutum | D08 | 2 | CH_ghi_162 | 4 | 5 | 0.00000000110669 |
| Gossypium hirsutum | A08 | 2 | CH_ghi_72 | 5 | 5 | 0.0000000000000443351 |
| Glycine max | Gm10 | 2 | CH_gma_83 | 4 | 4 | 0.000000000164214 |
| Glycine max | Gm02 | 2 | CH_gma_84 | 4 | 4 | 0.000000000164214 |
| Gossypium raimondii | Chr04 | 2 | CH_gra_36 | 5 | 5 | 0.0000000000000286272 |
| Lotus japonicus | chr5 | 2 | CH_lja_345 | 3 | 18 | 0.00034961 |
| Malus domestica | Chr12 | 2 | CH_mdo_757 | 2 | 2 | 0.000796344 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_106 | 3 | 3 | 0.000000081633 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_491 | 2 | 2 | 0.00013514 |
| Populus trichocarpa | Chr16 | 2 | CH_ptr_550 | 2 | 2 | 0.000867002 |
| Phaseolus vulgaris | Chr07 | 2 | CH_pvu_428 | 2 | 2 | 0.000440836 |
| Salix brachista | GWHAAZH00000016 | 2 | CH_sbr_146 | 4 | 31 | 0.00000164758 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_1382 | 2 | 2 | 0.000730727 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_514 | 3 | 3 | 0.0000000711967 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 2 | CH_tpr_142 | 3 | 5 | 0.00000171867 |
| Tripterygium wilfordii | NC_052236.1 | 2 | CH_twi_321 | 2 | 2 | 0.00083626 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |