Functional clusters
Information
- Type MapMan
- Description Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (COB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 1 | CH_acertr_62 | 4 | 4 | 0.000000000520337 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 1 | CH_arhy_337 | 3 | 3 | 0.00000349564 |
| Amborella trichopoda | AmTr_v1.0_scaffold00047 | 1 | CH_atr_97 | 3 | 3 | 0.000000331332 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_113 | 3 | 3 | 0.000000863699 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_692 | 3 | 11 | 0.000236357 |
| Capsicum annuum | PGAv.1.6.scaffold1228 | 1 | CH_can_207 | 3 | 3 | 0.00000835352 |
| Cicer arietinum L. | Ca_LG1_v3 | 1 | CH_car_245 | 3 | 10 | 0.000311132 |
| Citrus clementina | scaffold_3 | 1 | CH_ccl_83 | 4 | 4 | 0.0000000003478 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_130 | 3 | 3 | 0.00000072273 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 1 | CH_cqu_100 | 4 | 4 | 0.00000000154629 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1177 | 1 | CH_cqu_129 | 4 | 6 | 0.0000000231791 |
| Daucus carota | DCARv2_Chr7 | 1 | CH_dca_152 | 3 | 3 | 0.00000222097 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_392 | 3 | 12 | 0.000487317 |
| Davidia involucrata | GWHABJS00000012 | 1 | CH_din_152 | 3 | 3 | 0.000000619075 |
| Durio zibethinus | NW_019167838.1 | 1 | CH_dzi_141 | 3 | 3 | 0.00000262948 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_105 | 4 | 5 | 0.00000000121597 |
| Fragaria x ananassa | Fvb5-1 | 1 | CH_fan_317 | 3 | 4 | 0.000023577 |
| Fragaria x ananassa | Fvb6-2 | 1 | CH_fan_447 | 3 | 7 | 0.000206126 |
| Fragaria x ananassa | Fvb6-3 | 1 | CH_fan_490 | 3 | 8 | 0.000329709 |
| Fragaria x ananassa | Fvb6-1 | 1 | CH_fan_491 | 3 | 8 | 0.000329709 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_289 | 3 | 7 | 0.0000662492 |
| Fragaria vesca | Fvb5 | 1 | CH_fve_81 | 4 | 4 | 0.000000000613994 |
| Glycine max | Gm18 | 1 | CH_gma_248 | 3 | 3 | 0.00000382712 |
| Helianthus annuus | HanXRQChr07 | 1 | CH_han_279 | 3 | 3 | 0.000000640626 |
| Lonicera japonica | GWHAAZE00000081 | 1 | CH_lonja_127 | 4 | 4 | 0.000000000879629 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_171 | 3 | 3 | 0.000000198133 |
| Malus domestica | Chr14 | 1 | CH_mdo_270 | 3 | 3 | 0.0000014668 |
| Manihot esculenta | Chromosome06 | 1 | CH_mes_213 | 3 | 3 | 0.00000159966 |
| Medicago truncatula | chr6 | 1 | CH_mtr_354 | 3 | 3 | 0.000000724204 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_144 | 3 | 3 | 0.00000241551 |
| Prunus persica | Pp05 | 1 | CH_ppe_118 | 4 | 4 | 0.000000000410993 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_139 | 3 | 3 | 0.000000673472 |
| Populus trichocarpa | Chr15 | 1 | CH_ptr_233 | 3 | 3 | 0.00000182416 |
| Phaseolus vulgaris | Chr08 | 1 | CH_pvu_202 | 3 | 3 | 0.00000294754 |
| Quercus lobata | 10 | 1 | CH_qlo_500 | 3 | 3 | 0.00000114355 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_224 | 4 | 7 | 0.0000000158227 |
| Salix brachista | GWHAAZH00000015 | 1 | CH_sbr_132 | 3 | 3 | 0.000000714759 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_214 | 3 | 3 | 0.00000188102 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_81 | 4 | 4 | 0.000000000628338 |
| Trochodendron aralioides | group4 | 1 | CH_tar_14 | 6 | 7 | 0.00000000000000333285 |
| Trochodendron aralioides | group0 | 1 | CH_tar_222 | 3 | 4 | 0.0000209484 |
| Theobroma cacao | Chromosome_3 | 1 | CH_tca_248 | 3 | 5 | 0.0000192975 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 1 | CH_tpr_168 | 3 | 4 | 0.0000056715 |
| Vigna mungo | CM024070.1 | 1 | CH_vmu_130 | 3 | 3 | 0.00000227961 |
| Acer truncatum | chr9 | 2 | CH_acertr_62 | 4 | 4 | 0.000000000520337 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 2 | CH_arhy_337 | 3 | 3 | 0.00000349564 |
| Amborella trichopoda | AmTr_v1.0_scaffold00047 | 2 | CH_atr_97 | 3 | 3 | 0.000000331332 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_113 | 3 | 3 | 0.000000863699 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_692 | 3 | 11 | 0.000236357 |
| Capsicum annuum | PGAv.1.6.scaffold1228 | 2 | CH_can_207 | 3 | 3 | 0.00000835352 |
| Cicer arietinum L. | Ca_LG1_v3 | 2 | CH_car_245 | 3 | 10 | 0.000311132 |
| Citrus clementina | scaffold_3 | 2 | CH_ccl_83 | 4 | 4 | 0.0000000003478 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_130 | 3 | 3 | 0.00000072273 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 2 | CH_cqu_100 | 4 | 4 | 0.00000000154629 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1177 | 2 | CH_cqu_129 | 4 | 6 | 0.0000000231791 |
| Daucus carota | DCARv2_Chr7 | 2 | CH_dca_152 | 3 | 3 | 0.00000222097 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_392 | 3 | 12 | 0.000487317 |
| Davidia involucrata | GWHABJS00000012 | 2 | CH_din_152 | 3 | 3 | 0.000000619075 |
| Durio zibethinus | NW_019167838.1 | 2 | CH_dzi_141 | 3 | 3 | 0.00000262948 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_300 | 4 | 4 | 0.000000000602105 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_105 | 4 | 5 | 0.00000000121597 |
| Fragaria x ananassa | Fvb5-1 | 2 | CH_fan_317 | 3 | 4 | 0.000023577 |
| Fragaria x ananassa | Fvb6-2 | 2 | CH_fan_447 | 3 | 7 | 0.000206126 |
| Fragaria x ananassa | Fvb6-3 | 2 | CH_fan_490 | 3 | 8 | 0.000329709 |
| Fragaria x ananassa | Fvb6-1 | 2 | CH_fan_491 | 3 | 8 | 0.000329709 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_289 | 3 | 7 | 0.0000662492 |
| Fragaria vesca | Fvb5 | 2 | CH_fve_81 | 4 | 4 | 0.000000000613994 |
| Glycine max | Gm18 | 2 | CH_gma_248 | 3 | 3 | 0.00000382712 |
| Helianthus annuus | HanXRQChr07 | 2 | CH_han_279 | 3 | 3 | 0.000000640626 |
| Lotus japonicus | chr1 | 2 | CH_lja_204 | 3 | 3 | 0.00000521581 |
| Lotus japonicus | chr2 | 2 | CH_lja_388 | 3 | 10 | 0.000624098 |
| Lonicera japonica | GWHAAZE00000081 | 2 | CH_lonja_127 | 4 | 4 | 0.000000000879629 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_171 | 3 | 3 | 0.000000198133 |
| Malus domestica | Chr14 | 2 | CH_mdo_270 | 3 | 3 | 0.0000014668 |
| Manihot esculenta | Chromosome06 | 2 | CH_mes_213 | 3 | 3 | 0.00000159966 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_144 | 3 | 3 | 0.00000241551 |
| Prunus persica | Pp05 | 2 | CH_ppe_118 | 4 | 4 | 0.000000000410993 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_139 | 3 | 3 | 0.000000673472 |
| Populus trichocarpa | Chr15 | 2 | CH_ptr_233 | 3 | 3 | 0.00000182416 |
| Phaseolus vulgaris | Chr08 | 2 | CH_pvu_202 | 3 | 3 | 0.00000294754 |
| Quercus lobata | 10 | 2 | CH_qlo_500 | 3 | 3 | 0.00000114355 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_224 | 4 | 7 | 0.0000000158227 |
| Salix brachista | GWHAAZH00000015 | 2 | CH_sbr_132 | 3 | 3 | 0.000000714759 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_214 | 3 | 3 | 0.00000188102 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_81 | 4 | 4 | 0.000000000628338 |
| Trochodendron aralioides | group4 | 2 | CH_tar_14 | 6 | 7 | 0.00000000000000333285 |
| Trochodendron aralioides | group0 | 2 | CH_tar_222 | 3 | 4 | 0.0000209484 |
| Theobroma cacao | Chromosome_3 | 2 | CH_tca_248 | 3 | 5 | 0.0000192975 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 2 | CH_tpr_168 | 3 | 4 | 0.0000056715 |
| Vigna mungo | CM024070.1 | 2 | CH_vmu_130 | 3 | 3 | 0.00000227961 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |