Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cellulose.cellulose synthase complex (CSC).secondary cell wall CSC.regulatory protein (TED)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cannabis sativa NC_044377.1 1 CH_cansat_336 2 2 0.000393985
Carpinus fangiana Cfa05 1 CH_cfa_103 3 4 0.000000137654
Durio zibethinus NW_019167937.1 1 CH_dzi_400 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_452 2 2 0.000448722
Fragaria x ananassa Fvb5-1 1 CH_fan_283 3 10 0.0000101643
Fragaria vesca Fvb5 1 CH_fve_210 3 11 0.00000343439
Glycine max Gm14 1 CH_gma_324 2 2 0.0000379557
Lonicera japonica GWHAAZE00000002 1 CH_lonja_188 3 3 0.0000000537991
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_391 2 2 0.000154202
Nelumbo nucifera chr5 1 CH_nnu_401 2 2 0.000436015
Pisum sativum chr6LG2 1 CH_psa_422 2 4 0.000938861
Quercus lobata 9 1 CH_qlo_442 3 4 0.000000319847
Solanum lycopersicum SL4.0ch03 1 CH_sly_474 2 2 0.000352164
Solanum tuberosum ST4.03ch04 1 CH_stu_604 2 2 0.000768679
Solanum tuberosum ST4.03ch06 1 CH_stu_605 2 2 0.000768679
Theobroma cacao Chromosome_8 1 CH_tca_392 2 2 0.000439432
Cannabis sativa NC_044377.1 2 CH_cansat_336 2 2 0.000393985
Carpinus fangiana Cfa05 2 CH_cfa_103 3 4 0.000000137654
Durio zibethinus NW_019167937.1 2 CH_dzi_400 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_452 2 2 0.000448722
Fragaria x ananassa Fvb5-1 2 CH_fan_283 3 10 0.0000101643
Fragaria vesca Fvb5 2 CH_fve_210 3 11 0.00000343439
Glycine max Gm14 2 CH_gma_324 2 2 0.0000379557
Lonicera japonica GWHAAZE00000002 2 CH_lonja_188 3 3 0.0000000537991
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_391 2 2 0.000154202
Nelumbo nucifera chr5 2 CH_nnu_401 2 2 0.000436015
Pisum sativum chr6LG2 2 CH_psa_422 2 4 0.000938861
Quercus lobata 9 2 CH_qlo_442 3 4 0.000000319847
Solanum lycopersicum SL4.0ch03 2 CH_sly_474 2 2 0.000352164
Solanum tuberosum ST4.03ch04 2 CH_stu_604 2 2 0.000768679
Solanum tuberosum ST4.03ch06 2 CH_stu_605 2 2 0.000768679
Theobroma cacao Chromosome_8 2 CH_tca_392 2 2 0.000439432

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001