Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.cellulose.cellulose synthase complex (CSC).CSC trafficking.regulatory protein (SHOU4)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_387 2 3 0.000211484
Cannabis sativa NC_044373.1 1 CH_cansat_222 2 2 0.0000656642
Corylus avellana 11 1 CH_cav_248 2 2 0.0000766695
Citrus clementina scaffold_7 1 CH_ccl_301 2 2 0.0000820311
Cucumis melo chr04 1 CH_cme_177 2 2 0.0000667111
Cucumis sativus L. chr3 1 CH_csa_203 2 2 0.0000834759
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_266 2 2 0.0000448722
Fragaria vesca Fvb6 1 CH_fve_264 2 2 0.0000589102
Helianthus annuus HanXRQChr03 1 CH_han_571 2 2 0.000231857
Malus domestica Chr17 1 CH_mdo_553 2 2 0.000227527
Malus domestica Chr09 1 CH_mdo_554 2 2 0.000227527
Manihot esculenta Chromosome06 1 CH_mes_355 2 2 0.000183189
Petunia axillaris Peaxi162Scf00006 1 CH_pax_307 2 2 0.000422134
Prunus persica Pp03 1 CH_ppe_331 2 2 0.0000745962
Populus trichocarpa Chr10 1 CH_ptr_218 3 6 0.00000100207
Populus trichocarpa Chr08 1 CH_ptr_495 2 2 0.000578001
Quercus lobata 5 1 CH_qlo_659 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_475 2 2 0.0000398653
Salix brachista GWHAAZH00000010 1 CH_sbr_141 3 6 0.00000119098
Salix brachista GWHAAZH00000008 1 CH_sbr_381 2 2 0.00063014
Solanum tuberosum ST4.03ch12 1 CH_stu_459 2 2 0.000153736
Theobroma cacao Chromosome_6 1 CH_tca_382 2 4 0.000439399
Tripterygium wilfordii NC_052253.1 1 CH_twi_110 3 6 0.000000932273
Tripterygium wilfordii NC_052243.1 1 CH_twi_283 2 2 0.000557507
Acer truncatum chr1 2 CH_acertr_387 2 3 0.000211484
Cannabis sativa NC_044373.1 2 CH_cansat_222 2 2 0.0000656642
Corylus avellana 11 2 CH_cav_248 2 2 0.0000766695
Citrus clementina scaffold_7 2 CH_ccl_301 2 2 0.0000820311
Cucumis melo chr04 2 CH_cme_177 2 2 0.0000667111
Cucumis sativus L. chr3 2 CH_csa_203 2 2 0.0000834759
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_266 2 2 0.0000448722
Eucalyptus grandis Chr06 2 CH_egr_678 2 2 0.0000585274
Fragaria vesca Fvb6 2 CH_fve_264 2 2 0.0000589102
Helianthus annuus HanXRQChr03 2 CH_han_571 2 2 0.000231857
Malus domestica Chr17 2 CH_mdo_553 2 2 0.000227527
Malus domestica Chr09 2 CH_mdo_554 2 2 0.000227527
Manihot esculenta Chromosome06 2 CH_mes_355 2 2 0.000183189
Petunia axillaris Peaxi162Scf00006 2 CH_pax_307 2 2 0.000422134
Prunus persica Pp03 2 CH_ppe_331 2 2 0.0000745962
Populus trichocarpa Chr10 2 CH_ptr_218 3 6 0.00000100207
Populus trichocarpa Chr08 2 CH_ptr_495 2 2 0.000578001
Quercus lobata 5 2 CH_qlo_659 2 2 0.0000516289
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_475 2 2 0.0000398653
Salix brachista GWHAAZH00000010 2 CH_sbr_141 3 6 0.00000119098
Salix brachista GWHAAZH00000008 2 CH_sbr_381 2 2 0.00063014
Solanum tuberosum ST4.03ch12 2 CH_stu_459 2 2 0.000153736
Theobroma cacao Chromosome_6 2 CH_tca_382 2 4 0.000439399
Tripterygium wilfordii NC_052253.1 2 CH_twi_110 3 6 0.000000932273
Tripterygium wilfordii NC_052243.1 2 CH_twi_283 2 2 0.000557507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001