Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.metallopeptidase activities.carboxypeptidase activities.M28-class carboxypeptidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00056 | 1 | CH_atr_328 | 2 | 2 | 0.000794407 |
| Ceratophyllum demersum | 8 | 1 | CH_cde_51 | 3 | 5 | 0.00000187093 |
| Cardamine hirsuta | Chr5 | 1 | CH_chi_416 | 2 | 2 | 0.000691204 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 1 | CH_eca_128 | 3 | 3 | 0.0000000604069 |
| Lotus japonicus | chr2 | 1 | CH_lja_153 | 3 | 4 | 0.000000613553 |
| Manihot esculenta | Chromosome10 | 1 | CH_mes_455 | 2 | 2 | 0.000610631 |
| Nicotiana tabacum | Nitab4.5_0000011 | 1 | CH_nta_139 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_286 | 3 | 24 | 0.000169056 |
| Petunia axillaris | Peaxi162Scf00518 | 1 | CH_pax_303 | 2 | 2 | 0.000422134 |
| Petunia axillaris | Peaxi162Scf00944 | 1 | CH_pax_304 | 2 | 2 | 0.000422134 |
| Sechium edule | LG08 | 1 | CH_sed_331 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_497 | 4 | 13 | 0.0000000520137 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_563 | 3 | 3 | 0.00000042718 |
| Sapria himalayana | scaffold37_5694058 | 1 | CH_shi_47 | 3 | 5 | 0.000000490384 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_545 | 2 | 2 | 0.000880411 |
| Selaginella moellendorffii | scaffold_8 | 1 | CH_smo_78 | 3 | 7 | 0.0000548624 |
| Utricularia gibba | unitig_26 | 1 | CH_ugi_284 | 2 | 2 | 0.000734592 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_60 | 3 | 3 | 0.000000458609 |
| Amborella trichopoda | AmTr_v1.0_scaffold00056 | 2 | CH_atr_328 | 2 | 2 | 0.000794407 |
| Ceratophyllum demersum | 8 | 2 | CH_cde_51 | 3 | 5 | 0.00000187093 |
| Cardamine hirsuta | Chr5 | 2 | CH_chi_416 | 2 | 2 | 0.000691204 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 2 | CH_eca_128 | 3 | 3 | 0.0000000604069 |
| Lotus japonicus | chr2 | 2 | CH_lja_153 | 3 | 4 | 0.000000613553 |
| Manihot esculenta | Chromosome10 | 2 | CH_mes_455 | 2 | 2 | 0.000610631 |
| Nicotiana tabacum | Nitab4.5_0000011 | 2 | CH_nta_139 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_286 | 3 | 24 | 0.000169056 |
| Petunia axillaris | Peaxi162Scf00518 | 2 | CH_pax_303 | 2 | 2 | 0.000422134 |
| Petunia axillaris | Peaxi162Scf00944 | 2 | CH_pax_304 | 2 | 2 | 0.000422134 |
| Sechium edule | LG08 | 2 | CH_sed_331 | 2 | 2 | 0.000713419 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_497 | 4 | 13 | 0.0000000520137 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_563 | 3 | 3 | 0.00000042718 |
| Sapria himalayana | scaffold37_5694058 | 2 | CH_shi_47 | 3 | 5 | 0.000000490384 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_545 | 2 | 2 | 0.000880411 |
| Selaginella moellendorffii | scaffold_8 | 2 | CH_smo_78 | 3 | 7 | 0.0000548624 |
| Utricularia gibba | unitig_26 | 2 | CH_ugi_284 | 2 | 2 | 0.000734592 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_60 | 3 | 3 | 0.000000458609 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |