Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.metallopeptidase activities.M16 families.peptidase (Nardilysin-like)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 1 | CH_aar_234 | 2 | 2 | 0.000547395 |
| Actinidia chinensis | Lachesis_group24 | 1 | CH_ach_232 | 2 | 2 | 0.000543213 |
| Actinidia chinensis | Lachesis_group5 | 1 | CH_ach_44 | 3 | 5 | 0.000000442572 |
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_149 | 3 | 3 | 0.000000784211 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 1 | CH_ama_11 | 4 | 5 | 0.000000000144225 |
| Amborella trichopoda | AmTr_v1.0_scaffold00103 | 1 | CH_atr_78 | 3 | 3 | 0.0000000378665 |
| Brassica oleracea | C6 | 1 | CH_bol_430 | 2 | 2 | 0.000915212 |
| Capsicum annuum | PGAv.1.6.scaffold676 | 1 | CH_can_270 | 2 | 2 | 0.0000826105 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_388 | 2 | 2 | 0.000246093 |
| Cardamine hirsuta | Chr5 | 1 | CH_chi_134 | 3 | 4 | 0.000000286643 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_411 | 2 | 2 | 0.000731154 |
| Durio zibethinus | NW_019167937.1 | 1 | CH_dzi_75 | 3 | 3 | 0.000000032224 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 1 | CH_eca_430 | 2 | 3 | 0.000403835 |
| Eucalyptus grandis | Chr01 | 1 | CH_egr_110 | 6 | 7 | 3.02921e-18 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_24 | 6 | 13 | 7.66821e-16 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_457 | 2 | 3 | 0.000964932 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_537 | 2 | 2 | 0.000359324 |
| Malus domestica | Chr09 | 1 | CH_mdo_740 | 2 | 2 | 0.000796344 |
| Manihot esculenta | Chromosome09 | 1 | CH_mes_413 | 2 | 2 | 0.000366379 |
| Nicotiana tabacum | Nitab4.5_0000733 | 1 | CH_nta_138 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_101 | 3 | 3 | 0.0000000836762 |
| Punica granatum | NC_045131.1 | 1 | CH_pgr_46 | 4 | 4 | 0.00000000000633786 |
| Prunus persica | Pp06 | 1 | CH_ppe_404 | 2 | 2 | 0.000223789 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_69 | 7 | 30 | 0.000000000000007334 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_301 | 4 | 5 | 0.0000000000606942 |
| Solanum lycopersicum | SL4.0ch04 | 1 | CH_sly_409 | 2 | 2 | 0.000176082 |
| Solanum pennellii | Spenn-ch04 | 1 | CH_spe_356 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch04 | 1 | CH_stu_135 | 3 | 4 | 0.0000000157565 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_94 | 4 | 9 | 0.000000000742312 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_224 | 2 | 2 | 0.0000756974 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_61 | 4 | 6 | 0.000000000180531 |
| Vitis vinifera | chr8 | 1 | CH_vvi_334 | 2 | 2 | 0.000228189 |
| Aethionema arabicum | LG-10 | 2 | CH_aar_234 | 2 | 2 | 0.000547395 |
| Actinidia chinensis | Lachesis_group24 | 2 | CH_ach_232 | 2 | 2 | 0.000543213 |
| Actinidia chinensis | Lachesis_group5 | 2 | CH_ach_44 | 3 | 5 | 0.000000442572 |
| Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_149 | 3 | 3 | 0.000000784211 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 2 | CH_ama_11 | 4 | 5 | 0.000000000144225 |
| Amborella trichopoda | AmTr_v1.0_scaffold00103 | 2 | CH_atr_78 | 3 | 3 | 0.0000000378665 |
| Brassica oleracea | C6 | 2 | CH_bol_430 | 2 | 2 | 0.000915212 |
| Capsicum annuum | PGAv.1.6.scaffold676 | 2 | CH_can_270 | 2 | 2 | 0.0000826105 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_388 | 2 | 2 | 0.000246093 |
| Cardamine hirsuta | Chr5 | 2 | CH_chi_134 | 3 | 4 | 0.000000286643 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_411 | 2 | 2 | 0.000731154 |
| Durio zibethinus | NW_019167937.1 | 2 | CH_dzi_75 | 3 | 3 | 0.000000032224 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 2 | CH_eca_430 | 2 | 3 | 0.000403835 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_110 | 6 | 7 | 3.02921e-18 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_24 | 6 | 13 | 7.66821e-16 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_617 | 2 | 2 | 0.000267016 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_457 | 2 | 3 | 0.000964932 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_537 | 2 | 2 | 0.000359324 |
| Malus domestica | Chr09 | 2 | CH_mdo_740 | 2 | 2 | 0.000796344 |
| Manihot esculenta | Chromosome09 | 2 | CH_mes_413 | 2 | 2 | 0.000366379 |
| Nicotiana tabacum | Nitab4.5_0000733 | 2 | CH_nta_138 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_101 | 3 | 3 | 0.0000000836762 |
| Punica granatum | NC_045131.1 | 2 | CH_pgr_46 | 4 | 4 | 0.00000000000633786 |
| Prunus persica | Pp06 | 2 | CH_ppe_404 | 2 | 2 | 0.000223789 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_69 | 7 | 30 | 0.000000000000007334 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_301 | 4 | 5 | 0.0000000000606942 |
| Solanum lycopersicum | SL4.0ch04 | 2 | CH_sly_409 | 2 | 2 | 0.000176082 |
| Solanum pennellii | Spenn-ch04 | 2 | CH_spe_356 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch04 | 2 | CH_stu_135 | 3 | 4 | 0.0000000157565 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_94 | 4 | 9 | 0.000000000742312 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_224 | 2 | 2 | 0.0000756974 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_61 | 4 | 6 | 0.000000000180531 |
| Vitis vinifera | chr8 | 2 | CH_vvi_334 | 2 | 2 | 0.000228189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |