Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.proteolysis.serine-type peptidase activities.S28-class serine carboxypeptidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_77 4 8 0.00000000514776
Actinidia chinensis Lachesis_group24 1 CH_ach_35 3 3 0.000000154921
Arabidopsis lyrata scaffold_6 1 CH_aly_168 3 4 0.00000146363
Avicennia marina ScioBoG_19834_HRSCAF_19925 1 CH_ama_27 3 3 0.000000624499
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 1 CH_amhyb_82 3 4 0.00000510039
Aquilegia oxysepala CHR01 1 CH_aox_66 5 21 0.0000000388031
Arabidopsis thaliana Chr4 1 CH_ath_406 2 2 0.000601633
Brassica carinata ChrC03 1 CH_bca_295 3 3 0.000000311873
Brassica carinata ChrB05 1 CH_bca_367 3 4 0.00000124736
Brassica napus C02 1 CH_bna_267 3 3 0.000000914265
Brassica napus BNapus_Darmor_BZH_scaffold_38 1 CH_bna_268 3 3 0.000000914265
Brassica oleracea C2 1 CH_bol_188 3 6 0.00000704877
Brassica rapa A02 1 CH_bra_107 3 3 0.000000456177
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_130 3 5 0.00000863306
Camellia sinensis var. sinensis Chr11 1 CH_camsi_430 3 7 0.00000617926
Cannabis sativa NC_044379.1 1 CH_cansat_94 4 10 0.0000000124769
Corylus avellana 6 1 CH_cav_55 4 6 0.000000000709716
Citrus clementina scaffold_8 1 CH_ccl_14 9 13 1.01e-22
Citrus clementina scaffold_4 1 CH_ccl_60 6 17 0.0000000000191114
Carpinus fangiana Cfa04 1 CH_cfa_10 8 12 1.00312e-22
Cardamine hirsuta Chr6 1 CH_chi_160 3 4 0.00000160508
Carya illinoinensis Chr13 1 CH_cil_79 5 6 0.000000000000167382
Cucumis melo chr11 1 CH_cme_98 3 3 0.000000233653
Corchorus olitorius AWUE01016572.1 1 CH_col_35 3 4 0.0000020475
Carica papaya supercontig_47 1 CH_cpa_392 2 2 0.000950661
Capsella rubella scaffold_6 1 CH_cru_215 3 7 0.0000157065
Cucumis sativus L. chr6 1 CH_csa_130 3 3 0.000000585356
Davidia involucrata GWHABJS00000010 1 CH_din_170 3 4 0.00000180066
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_193 3 4 0.00000144956
Eucalyptus grandis Chr10 1 CH_egr_63 8 8 3.24453e-23
Fragaria x ananassa Fvb3-2 1 CH_fan_22 6 12 0.0000000000000103729
Fragaria vesca Fvb3 1 CH_fve_120 4 9 0.0000000254796
Gossypium hirsutum D09 1 CH_ghi_383 3 4 0.00000487591
Glycine max Gm03 1 CH_gma_195 3 3 0.000000475419
Hydrangea macrophylla Hma1.2p1_0051F.1 1 CH_hma_20 4 4 0.000000000287922
Lupinus albus Lalb_Chr10 1 CH_lal_108 3 4 0.000000925389
Lotus japonicus chr3 1 CH_lja_84 4 8 0.00000000537232
Lonicera japonica GWHAAZE00000002 1 CH_lonja_203 4 10 0.000000135244
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_252 3 4 0.00000261521
Magnolia biondii Chr17 1 CH_mbi_22 7 18 1.08431e-17
Manihot esculenta Chromosome14 1 CH_mes_130 4 4 0.00000000264778
Manihot esculenta Chromosome11 1 CH_mes_145 4 5 0.0000000132336
Nelumbo nucifera chr2 1 CH_nnu_94 4 11 0.0000000586043
Oryza sativa ssp. japonica chr10 1 CH_osa_367 2 2 0.000528123
Punica granatum NC_045132.1 1 CH_pgr_138 3 3 0.0000010135
Pisum sativum chr5LG3 1 CH_psa_56 4 6 0.00000000134102
Papaver somniferum NC_039366.1 1 CH_pso_702 2 2 0.000810838
Populus trichocarpa Chr01 1 CH_ptr_48 6 7 5.08563e-16
Phaseolus vulgaris Chr05 1 CH_pvu_46 5 5 0.0000000000000550885
Quercus lobata 4 1 CH_qlo_127 6 9 0.00000000000000857566
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_276 4 15 0.000000185178
Rhododendron simsii chr13 1 CH_rsi_100 4 4 0.000000000101586
Striga asiatica scaffold83 1 CH_sas_104 3 17 0.00033429
Salvia bowleyana GWHASIU00000001 1 CH_sbo_100 4 7 0.00000000207607
Sequoiadendron giganteum chr3 1 CH_sgi_179 6 8 0.0000000000000174393
Sequoiadendron giganteum chr2 1 CH_sgi_193 8 49 0.0000000000000889198
Solanum lycopersicum SL4.0ch11 1 CH_sly_558 2 2 0.000880411
Solanum pennellii Spenn-ch11 1 CH_spe_510 2 2 0.000667186
Selenicereus undatus Scaffold_19641 1 CH_sun_62 3 4 0.00000177385
Trochodendron aralioides group2 1 CH_tar_196 3 5 0.00000454018
Theobroma cacao Chromosome_9 1 CH_tca_76 4 4 0.0000000000825063
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_143 3 5 0.000001891
Utricularia gibba unitig_22 1 CH_ugi_261 2 2 0.000440755
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_158 3 4 0.00000435105
Vigna mungo CM024079.1 1 CH_vmu_428 2 2 0.000969211
Vitis vinifera chr6 1 CH_vvi_37 6 6 2.64762e-17
Zea mays 9 1 CH_zma_85 3 3 0.000000470605
Acer truncatum chr3 2 CH_acertr_77 4 8 0.00000000514776
Actinidia chinensis Lachesis_group24 2 CH_ach_35 3 3 0.000000154921
Arabidopsis lyrata scaffold_6 2 CH_aly_168 3 4 0.00000146363
Avicennia marina ScioBoG_19834_HRSCAF_19925 2 CH_ama_27 3 3 0.000000624499
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 2 CH_amhyb_82 3 4 0.00000510039
Aquilegia oxysepala CHR01 2 CH_aox_66 5 21 0.0000000388031
Arabidopsis thaliana Chr4 2 CH_ath_406 2 2 0.000601633
Brassica carinata ChrC03 2 CH_bca_295 3 3 0.000000311873
Brassica carinata ChrB05 2 CH_bca_367 3 4 0.00000124736
Brassica oleracea C2 2 CH_bol_188 3 6 0.00000704877
Brassica rapa A02 2 CH_bra_107 3 3 0.000000456177
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_130 3 5 0.00000863306
Camellia sinensis var. sinensis Chr11 2 CH_camsi_430 3 7 0.00000617926
Cannabis sativa NC_044379.1 2 CH_cansat_94 4 10 0.0000000124769
Corylus avellana 6 2 CH_cav_55 4 6 0.000000000709716
Citrus clementina scaffold_8 2 CH_ccl_14 9 13 1.01e-22
Citrus clementina scaffold_4 2 CH_ccl_60 6 17 0.0000000000191114
Carpinus fangiana Cfa04 2 CH_cfa_10 8 12 1.00312e-22
Cardamine hirsuta Chr6 2 CH_chi_160 3 4 0.00000160508
Carya illinoinensis Chr13 2 CH_cil_79 5 6 0.000000000000167382
Cucumis melo chr11 2 CH_cme_98 3 3 0.000000233653
Corchorus olitorius AWUE01016572.1 2 CH_col_35 3 4 0.0000020475
Carica papaya supercontig_47 2 CH_cpa_392 2 2 0.000950661
Capsella rubella scaffold_6 2 CH_cru_215 3 7 0.0000157065
Cucumis sativus L. chr6 2 CH_csa_130 3 3 0.000000585356
Davidia involucrata GWHABJS00000010 2 CH_din_170 3 4 0.00000180066
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_193 3 4 0.00000144956
Eucalyptus grandis Chr08 2 CH_egr_609 3 5 0.0000167655
Eucalyptus grandis Chr10 2 CH_egr_63 8 8 3.24453e-23
Fragaria x ananassa Fvb3-2 2 CH_fan_22 6 12 0.0000000000000103729
Fragaria vesca Fvb3 2 CH_fve_120 4 9 0.0000000254796
Gossypium hirsutum D09 2 CH_ghi_383 3 4 0.00000487591
Glycine max Gm03 2 CH_gma_195 3 3 0.000000475419
Hydrangea macrophylla Hma1.2p1_0051F.1 2 CH_hma_20 4 4 0.000000000287922
Lupinus albus Lalb_Chr10 2 CH_lal_108 3 4 0.000000925389
Lotus japonicus chr3 2 CH_lja_84 4 8 0.00000000537232
Lonicera japonica GWHAAZE00000002 2 CH_lonja_203 4 10 0.000000135244
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_252 3 4 0.00000261521
Magnolia biondii Chr17 2 CH_mbi_22 7 18 1.08431e-17
Manihot esculenta Chromosome14 2 CH_mes_130 4 4 0.00000000264778
Manihot esculenta Chromosome11 2 CH_mes_145 4 5 0.0000000132336
Nelumbo nucifera chr2 2 CH_nnu_94 4 11 0.0000000586043
Oryza sativa ssp. japonica chr10 2 CH_osa_367 2 2 0.000528123
Punica granatum NC_045132.1 2 CH_pgr_138 3 3 0.0000010135
Pisum sativum chr5LG3 2 CH_psa_56 4 6 0.00000000134102
Papaver somniferum NC_039366.1 2 CH_pso_702 2 2 0.000810838
Populus trichocarpa Chr01 2 CH_ptr_48 6 7 5.08563e-16
Phaseolus vulgaris Chr05 2 CH_pvu_46 5 5 0.0000000000000550885
Quercus lobata 4 2 CH_qlo_127 6 9 0.00000000000000857566
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_276 4 15 0.000000185178
Rhododendron simsii chr13 2 CH_rsi_100 4 4 0.000000000101586
Striga asiatica scaffold83 2 CH_sas_104 3 17 0.00033429
Salvia bowleyana GWHASIU00000001 2 CH_sbo_100 4 7 0.00000000207607
Sequoiadendron giganteum chr3 2 CH_sgi_179 6 8 0.0000000000000174393
Sequoiadendron giganteum chr2 2 CH_sgi_193 8 49 0.0000000000000889198
Solanum lycopersicum SL4.0ch11 2 CH_sly_558 2 2 0.000880411
Solanum pennellii Spenn-ch11 2 CH_spe_510 2 2 0.000667186
Selenicereus undatus Scaffold_19641 2 CH_sun_62 3 4 0.00000177385
Trochodendron aralioides group2 2 CH_tar_196 3 5 0.00000454018
Theobroma cacao Chromosome_9 2 CH_tca_76 4 4 0.0000000000825063
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_143 3 5 0.000001891
Utricularia gibba unitig_22 2 CH_ugi_261 2 2 0.000440755
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_158 3 4 0.00000435105
Vigna mungo CM024079.1 2 CH_vmu_428 2 2 0.000969211
Vitis vinifera chr6 2 CH_vvi_37 6 6 2.64762e-17
Zea mays 9 2 CH_zma_85 3 3 0.000000470605

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001