Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT5)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_447 | 2 | 2 | 0.000990066 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_448 | 2 | 2 | 0.000990066 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_371 | 2 | 2 | 0.000429738 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 1 | CH_can_105 | 4 | 9 | 0.0000000149064 |
| Citrus clementina | scaffold_1 | 1 | CH_ccl_218 | 3 | 4 | 0.00000666017 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_351 | 3 | 9 | 0.000139663 |
| Cucumis melo | chr06 | 1 | CH_cme_71 | 4 | 9 | 0.0000000141299 |
| Cucumis sativus L. | chr3 | 1 | CH_csa_178 | 3 | 7 | 0.000030703 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_422 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr06 | 1 | CH_egr_273 | 4 | 4 | 0.000000000126316 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_45 | 5 | 7 | 0.0000000000000929791 |
| Glycine max | Gm14 | 1 | CH_gma_272 | 3 | 5 | 0.00000982879 |
| Helianthus annuus | HanXRQChr01 | 1 | CH_han_274 | 3 | 4 | 0.000000501703 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 1 | CH_hma_58 | 3 | 3 | 0.000000185113 |
| Medicago truncatula | chr4 | 1 | CH_mtr_62 | 6 | 7 | 7.147e-16 |
| Olea europaea | scaffold1023 | 1 | CH_oeu_350 | 2 | 3 | 0.000480389 |
| Physcomitrium patens | Chr05 | 1 | CH_ppa_88 | 2 | 2 | 0.0000612726 |
| Populus trichocarpa | Chr11 | 1 | CH_ptr_241 | 3 | 3 | 0.0000028064 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_242 | 3 | 3 | 0.0000028064 |
| Quercus lobata | 8 | 1 | CH_qlo_329 | 4 | 8 | 0.00000000606583 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_758 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_217 | 3 | 4 | 0.000000499669 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_223 | 4 | 50 | 0.00000815677 |
| Sechium edule | LG03 | 1 | CH_sed_140 | 3 | 4 | 0.00000671675 |
| Sechium edule | LG08 | 1 | CH_sed_67 | 4 | 7 | 0.0000000188596 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_569 | 4 | 18 | 0.000000524053 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_580 | 3 | 3 | 0.000000783163 |
| Tripterygium wilfordii | NC_052245.1 | 1 | CH_twi_24 | 5 | 5 | 0.000000000000217616 |
| Vigna mungo | CM024072.1 | 1 | CH_vmu_115 | 3 | 3 | 0.000000526065 |
| Vitis vinifera | chrUn | 1 | CH_vvi_207 | 3 | 5 | 0.00000303662 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_447 | 2 | 2 | 0.000990066 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_448 | 2 | 2 | 0.000990066 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_371 | 2 | 2 | 0.000429738 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 2 | CH_can_105 | 4 | 9 | 0.0000000149064 |
| Citrus clementina | scaffold_1 | 2 | CH_ccl_218 | 3 | 4 | 0.00000666017 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_351 | 3 | 9 | 0.000139663 |
| Cucumis melo | chr06 | 2 | CH_cme_71 | 4 | 9 | 0.0000000141299 |
| Cucumis sativus L. | chr3 | 2 | CH_csa_178 | 3 | 7 | 0.000030703 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_422 | 2 | 2 | 0.000637775 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_273 | 4 | 4 | 0.000000000126316 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_45 | 5 | 7 | 0.0000000000000929791 |
| Glycine max | Gm14 | 2 | CH_gma_272 | 3 | 5 | 0.00000982879 |
| Helianthus annuus | HanXRQChr01 | 2 | CH_han_274 | 3 | 4 | 0.000000501703 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 2 | CH_hma_58 | 3 | 3 | 0.000000185113 |
| Olea europaea | scaffold1023 | 2 | CH_oeu_350 | 2 | 3 | 0.000480389 |
| Physcomitrium patens | Chr05 | 2 | CH_ppa_88 | 2 | 2 | 0.0000612726 |
| Populus trichocarpa | Chr11 | 2 | CH_ptr_241 | 3 | 3 | 0.0000028064 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_242 | 3 | 3 | 0.0000028064 |
| Quercus lobata | 8 | 2 | CH_qlo_329 | 4 | 8 | 0.00000000606583 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_758 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_217 | 3 | 4 | 0.000000499669 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_223 | 4 | 50 | 0.00000815677 |
| Sechium edule | LG03 | 2 | CH_sed_140 | 3 | 4 | 0.00000671675 |
| Sechium edule | LG08 | 2 | CH_sed_67 | 4 | 7 | 0.0000000188596 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_569 | 4 | 18 | 0.000000524053 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_580 | 3 | 3 | 0.000000783163 |
| Tripterygium wilfordii | NC_052245.1 | 2 | CH_twi_24 | 5 | 5 | 0.000000000000217616 |
| Vigna mungo | CM024072.1 | 2 | CH_vmu_115 | 3 | 3 | 0.000000526065 |
| Vitis vinifera | chrUn | 2 | CH_vvi_207 | 3 | 5 | 0.00000303662 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |