Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.proteolysis.serine-type peptidase activities.S8-class protease (subtilisin) families.protease (SBT1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 1 | CH_arhy_486 | 3 | 7 | 0.000153975 |
| Brassica carinata | ChrC04 | 1 | CH_bca_151 | 4 | 6 | 0.00000000389108 |
| Brassica carinata | ChrB04 | 1 | CH_bca_35 | 5 | 6 | 0.00000000000031614 |
| Brassica napus | C09 | 1 | CH_bna_188 | 4 | 8 | 0.0000000621239 |
| Brassica napus | A09 | 1 | CH_bna_319 | 3 | 3 | 0.00000308919 |
| Brassica oleracea | C9 | 1 | CH_bol_55 | 4 | 5 | 0.000000000953235 |
| Capsicum annuum | PGAv.1.6.scaffold1194 | 1 | CH_can_215 | 3 | 3 | 0.0000116704 |
| Capsicum annuum | PGAv.1.6.scaffold219 | 1 | CH_can_79 | 5 | 9 | 0.000000000681012 |
| Coffea canephora | chr10 | 1 | CH_ccan_113 | 3 | 13 | 0.00000283185 |
| Corchorus olitorius | AWUE01014938.1 | 1 | CH_col_8 | 6 | 7 | 0.000000000000574958 |
| Erythranthe guttata | scaffold_14 | 1 | CH_egut_38 | 7 | 13 | 0.0000000000000023365 |
| Gossypium hirsutum | D12 | 1 | CH_ghi_395 | 3 | 3 | 0.00000639973 |
| Glycine max | Gm16 | 1 | CH_gma_480 | 3 | 6 | 0.000335312 |
| Gossypium raimondii | Chr08 | 1 | CH_gra_193 | 3 | 3 | 0.000003518 |
| Lupinus albus | Lalb_Chr08 | 1 | CH_lal_144 | 3 | 3 | 0.00000836259 |
| Lupinus albus | Lalb_Chr13 | 1 | CH_lal_9 | 8 | 10 | 1.14308e-20 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_107 | 4 | 4 | 0.000000000407845 |
| Manihot esculenta | Chromosome06 | 1 | CH_mes_147 | 4 | 5 | 0.0000000165416 |
| Medicago truncatula | chr8 | 1 | CH_mtr_222 | 4 | 5 | 0.00000000760828 |
| Petunia axillaris | Peaxi162Scf00694 | 1 | CH_pax_62 | 5 | 20 | 0.0000000123807 |
| Prunus persica | Pp01 | 1 | CH_ppe_271 | 3 | 4 | 0.0000121493 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_121 | 3 | 3 | 0.000000228572 |
| Rhododendron simsii | chr08 | 1 | CH_rsi_265 | 3 | 3 | 0.00000605288 |
| Rhododendron simsii | chr03 | 1 | CH_rsi_266 | 3 | 3 | 0.00000605288 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_87 | 5 | 7 | 0.000000000031738 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_207 | 3 | 3 | 0.00000253382 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_268 | 4 | 35 | 0.0000448859 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_594 | 3 | 4 | 0.00000119594 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_44 | 6 | 10 | 0.000000000000189119 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_38 | 7 | 10 | 1.12467e-16 |
| Trochodendron aralioides | group5 | 1 | CH_tar_13 | 7 | 12 | 3.39086e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 1 | CH_tpr_132 | 4 | 10 | 0.00000105617 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_275 | 3 | 6 | 0.000166334 |
| Tripterygium wilfordii | NC_052237.1 | 1 | CH_twi_302 | 4 | 34 | 0.00074442 |
| Tripterygium wilfordii | NC_052248.1 | 1 | CH_twi_99 | 5 | 19 | 0.000000141912 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 2 | CH_arhy_486 | 3 | 7 | 0.000153975 |
| Brassica carinata | ChrC04 | 2 | CH_bca_151 | 4 | 6 | 0.00000000389108 |
| Brassica carinata | ChrB04 | 2 | CH_bca_35 | 5 | 6 | 0.00000000000031614 |
| Brassica oleracea | C9 | 2 | CH_bol_55 | 4 | 5 | 0.000000000953235 |
| Capsicum annuum | PGAv.1.6.scaffold1194 | 2 | CH_can_215 | 3 | 3 | 0.0000116704 |
| Capsicum annuum | PGAv.1.6.scaffold219 | 2 | CH_can_79 | 5 | 9 | 0.000000000681012 |
| Coffea canephora | chr10 | 2 | CH_ccan_113 | 3 | 13 | 0.00000283185 |
| Corchorus olitorius | AWUE01014938.1 | 2 | CH_col_8 | 6 | 7 | 0.000000000000574958 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_576 | 3 | 3 | 0.00000585771 |
| Erythranthe guttata | scaffold_14 | 2 | CH_egut_38 | 7 | 13 | 0.0000000000000023365 |
| Gossypium hirsutum | D12 | 2 | CH_ghi_395 | 3 | 3 | 0.00000639973 |
| Glycine max | Gm16 | 2 | CH_gma_480 | 3 | 6 | 0.000335312 |
| Gossypium raimondii | Chr08 | 2 | CH_gra_193 | 3 | 3 | 0.000003518 |
| Lupinus albus | Lalb_Chr08 | 2 | CH_lal_144 | 3 | 3 | 0.00000836259 |
| Lupinus albus | Lalb_Chr13 | 2 | CH_lal_9 | 8 | 10 | 1.14308e-20 |
| Lotus japonicus | chr3 | 2 | CH_lja_216 | 3 | 3 | 0.0000102015 |
| Lotus japonicus | chr2 | 2 | CH_lja_217 | 3 | 3 | 0.0000102015 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_107 | 4 | 4 | 0.000000000407845 |
| Manihot esculenta | Chromosome06 | 2 | CH_mes_147 | 4 | 5 | 0.0000000165416 |
| Petunia axillaris | Peaxi162Scf00694 | 2 | CH_pax_62 | 5 | 20 | 0.0000000123807 |
| Prunus persica | Pp01 | 2 | CH_ppe_271 | 3 | 4 | 0.0000121493 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_121 | 3 | 3 | 0.000000228572 |
| Rhododendron simsii | chr08 | 2 | CH_rsi_265 | 3 | 3 | 0.00000605288 |
| Rhododendron simsii | chr03 | 2 | CH_rsi_266 | 3 | 3 | 0.00000605288 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_87 | 5 | 7 | 0.000000000031738 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_207 | 3 | 3 | 0.00000253382 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_268 | 4 | 35 | 0.0000448859 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_594 | 3 | 4 | 0.00000119594 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_44 | 6 | 10 | 0.000000000000189119 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_38 | 7 | 10 | 1.12467e-16 |
| Trochodendron aralioides | group5 | 2 | CH_tar_13 | 7 | 12 | 3.39086e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 2 | CH_tpr_132 | 4 | 10 | 0.00000105617 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_275 | 3 | 6 | 0.000166334 |
| Tripterygium wilfordii | NC_052237.1 | 2 | CH_twi_302 | 4 | 34 | 0.00074442 |
| Tripterygium wilfordii | NC_052248.1 | 2 | CH_twi_99 | 5 | 19 | 0.000000141912 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |