Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.proteolysis.cysteine-type peptidase activities.C1-class protease (Papain)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 1 CH_aar_115 3 3 0.0000192279
Actinidia chinensis Lachesis_group27 1 CH_ach_12 5 6 0.000000000257654
Actinidia chinensis Lachesis_group5 1 CH_ach_28 4 4 0.0000000439506
Actinidia chinensis Lachesis_group19 1 CH_ach_4 7 10 0.0000000000000045175
Aquilegia oxysepala CHR02 1 CH_aox_122 3 3 0.0000221908
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_193 4 4 0.0000000143593
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_404 3 3 0.0000218007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_456 3 4 0.0000871583
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 1 CH_arhy_457 3 4 0.0000871583
Amborella trichopoda AmTr_v1.0_scaffold00061 1 CH_atr_57 4 4 0.00000000357997
Brassica carinata ChrC09 1 CH_bca_595 3 3 0.0000584813
Brassica napus A09 1 CH_bna_78 6 14 0.000000000120212
Brassica oleracea C1 1 CH_bol_290 3 4 0.000133416
Brassica oleracea C5 1 CH_bol_363 3 5 0.000333338
Brassica rapa A09 1 CH_bra_117 4 7 0.00000102327
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_124 3 3 0.00000467837
Camellia sinensis var. sinensis Chr7 1 CH_camsi_165 5 10 0.000000000990066
Camellia sinensis var. sinensis Chr8 1 CH_camsi_565 5 72 0.0000533528
Cannabis sativa NC_044377.1 1 CH_cansat_260 3 5 0.000130766
Capsicum annuum PGAv.1.6.scaffold370 1 CH_can_454 3 8 0.000880076
Cicer arietinum L. Ca_LG6_v3 1 CH_car_129 3 4 0.0000559405
Corylus avellana 2 1 CH_cav_48 5 8 0.000000000168543
Coffea canephora chr6 1 CH_ccan_40 5 39 0.000000000047754
Citrus clementina scaffold_2 1 CH_ccl_261 3 3 0.0000409819
Citrus clementina scaffold_9 1 CH_ccl_428 3 5 0.000409105
Carpinus fangiana Cfa01 1 CH_cfa_151 3 3 0.00000391479
Cardamine hirsuta Chr1 1 CH_chi_96 5 11 0.0000000158529
Carica papaya supercontig_103 1 CH_cpa_111 3 3 0.00000921875
Chenopodium quinoa C_Quinoa_Scaffold_1829 1 CH_cqu_85 6 26 0.000000000461822
Capsella rubella scaffold_5 1 CH_cru_236 3 3 0.000052485
Davidia involucrata GWHABJS00000020 1 CH_din_65 6 26 0.000000000284648
Davidia involucrata GWHABJS00000001 1 CH_din_68 5 11 0.00000000114887
Durio zibethinus NW_019167982.1 1 CH_dzi_130 5 28 0.00000146123
Durio zibethinus NW_019168470.1 1 CH_dzi_30 6 9 0.000000000000938227
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_39 6 14 0.00000000000066551
Eucalyptus grandis Chr04 1 CH_egr_13 17 24 1.59015e-37
Eucalyptus grandis Chr03 1 CH_egr_171 7 8 0.00000000000002452
Eucalyptus grandis Chr05 1 CH_egr_79 11 19 2.10659e-21
Erythranthe guttata scaffold_11 1 CH_egut_471 3 8 0.000786477
Fragaria x ananassa Fvb3-3 1 CH_fan_366 4 14 0.0000654621
Fragaria x ananassa Fvb6-4 1 CH_fan_372 3 3 0.0000757223
Gossypium hirsutum D05 1 CH_ghi_18 11 21 3.51788e-23
Gossypium hirsutum A04 1 CH_ghi_331 4 6 0.00000149592
Gossypium hirsutum D04 1 CH_ghi_76 6 6 0.000000000000106953
Gossypium hirsutum A05 1 CH_ghi_94 6 8 0.00000000000298939
Glycine max Gm12 1 CH_gma_26 8 10 6.22083e-18
Glycine max Gm06 1 CH_gma_8 17 61 5.28825e-32
Gossypium raimondii Chr09 1 CH_gra_40 7 13 0.0000000000000491367
Gossypium raimondii Chr12 1 CH_gra_88 5 7 0.000000000748017
Helianthus annuus HanXRQChr16 1 CH_han_28 8 10 1.16012e-18
Helianthus annuus HanXRQChr17 1 CH_han_6 12 12 1.06648e-32
Hydrangea macrophylla Hma1.2p1_0155F.1 1 CH_hma_16 5 5 0.0000000000384434
Hydrangea macrophylla Hma1.2p1_0178F.1 1 CH_hma_25 8 79 0.000000000795722
Lupinus albus Lalb_Chr01 1 CH_lal_155 3 3 0.0000135355
Lupinus albus Lalb_Chr11 1 CH_lal_159 4 17 0.0000209896
Lotus japonicus chr3 1 CH_lja_14 8 11 2.90407e-18
Lonicera japonica GWHAAZE00000008 1 CH_lonja_103 5 5 0.0000000000420596
Lonicera japonica GWHAAZE00000001 1 CH_lonja_257 4 7 0.00000148595
Lonicera japonica GWHAAZE00000001 1 CH_lonja_568 3 5 0.000417356
Lonicera japonica GWHAAZE00000004 1 CH_lonja_98 6 10 0.0000000000084364
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_290 3 3 0.0000129833
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_76 5 5 0.00000000000514598
Magnolia biondii Chr07 1 CH_mbi_17 7 10 3.94464e-18
Malus domestica Chr17 1 CH_mdo_155 5 9 0.00000000457726
Malus domestica Chr10 1 CH_mdo_244 4 6 0.000000612368
Malus domestica Chr05 1 CH_mdo_313 4 9 0.0000051326
Manihot esculenta Chromosome16 1 CH_mes_240 4 9 0.00000566097
Manihot esculenta Chromosome17 1 CH_mes_259 4 12 0.0000221838
Medicago truncatula chr4 1 CH_mtr_290 6 65 0.00000012589
Nelumbo nucifera chr1 1 CH_nnu_11 8 15 1.93871e-19
Nicotiana tabacum Nitab4.5_0000681 1 CH_nta_175 3 16 0.000846267
Olea europaea chr16 1 CH_oeu_124 3 3 0.0000156175
Olea europaea chr21 1 CH_oeu_3 10 18 2.17911e-23
Punica granatum NC_045131.1 1 CH_pgr_12 10 33 6.40383e-19
Prunus persica Pp03 1 CH_ppe_124 6 22 0.000000000679954
Prunus persica Pp04 1 CH_ppe_288 3 3 0.0000191986
Pisum sativum chr1LG6 1 CH_psa_154 3 3 0.00000277552
Populus trichocarpa Chr07 1 CH_ptr_148 5 10 0.0000000138226
Populus trichocarpa Chr04 1 CH_ptr_38 8 12 2.57724e-17
Phaseolus vulgaris Chr11 1 CH_pvu_11 13 46 1.32912e-23
Phaseolus vulgaris Chr11 1 CH_pvu_97 5 8 0.00000000531995
Quercus lobata 4 1 CH_qlo_78 7 7 3.92339e-18
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_230 6 35 0.0000000189414
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_637 4 24 0.000223259
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_746 3 6 0.000546355
Rhododendron simsii chr03 1 CH_rsi_295 3 3 0.0000182711
Rhododendron simsii chr13 1 CH_rsi_73 6 11 0.00000000000343377
Solanum lycopersicum SL4.0ch02 1 CH_sly_245 4 14 0.0000105969
Solanum lycopersicum SL4.0ch02 1 CH_sly_252 3 3 0.0000151153
Solanum lycopersicum SL4.0ch12 1 CH_sly_253 3 3 0.0000151153
Schrenkiella parvula ch1-1 1 CH_spa_148 3 3 0.0000241772
Schrenkiella parvula ch3-1 1 CH_spa_149 3 3 0.0000241772
Solanum pennellii Spenn-ch12 1 CH_spe_222 3 3 0.0000120486
Solanum pennellii Spenn-ch02 1 CH_spe_34 7 16 0.0000000000000141466
Solanum pennellii Spenn-ch02 1 CH_spe_401 3 6 0.000240631
Solanum tuberosum ST4.03ch12 1 CH_stu_306 3 3 0.000010242
Solanum tuberosum ST4.03ch02 1 CH_stu_52 7 17 0.0000000000000181696
Theobroma cacao Chromosome_6 1 CH_tca_120 6 33 0.00000000914542
Tripterygium wilfordii NC_052240.1 1 CH_twi_166 3 4 0.0000393315
Tripterygium wilfordii NC_052252.1 1 CH_twi_304 3 5 0.000784838
Tripterygium wilfordii NC_052233.1 1 CH_twi_54 5 6 0.000000000218069
Utricularia gibba unitig_699 1 CH_ugi_1 12 15 4.47494e-29
Utricularia gibba unitig_85 1 CH_ugi_6 7 9 0.00000000000000371358
Vigna mungo CM024076.1 1 CH_vmu_48 6 22 0.000000000554386
Vigna mungo CM024076.1 1 CH_vmu_55 5 11 0.00000000485851
Vanilla planifolia CM028150.1 1 CH_vpl_84 3 3 0.0000037262
Vitis vinifera chr18 1 CH_vvi_225 4 14 0.00000636998
Vitis vinifera chr12 1 CH_vvi_78 5 6 0.0000000000233467
Zea mays 9 1 CH_zma_166 3 4 0.000063654
Aethionema arabicum LG-8 2 CH_aar_115 3 3 0.0000192279
Actinidia chinensis Lachesis_group27 2 CH_ach_12 5 6 0.000000000257654
Actinidia chinensis Lachesis_group5 2 CH_ach_28 4 4 0.0000000439506
Actinidia chinensis Lachesis_group19 2 CH_ach_4 7 10 0.0000000000000045175
Aquilegia oxysepala CHR02 2 CH_aox_122 3 3 0.0000221908
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_193 4 4 0.0000000143593
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_404 3 3 0.0000218007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_456 3 4 0.0000871583
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 2 CH_arhy_457 3 4 0.0000871583
Amborella trichopoda AmTr_v1.0_scaffold00061 2 CH_atr_57 4 4 0.00000000357997
Brassica carinata ChrC09 2 CH_bca_595 3 3 0.0000584813
Brassica oleracea C1 2 CH_bol_290 3 4 0.000133416
Brassica oleracea C5 2 CH_bol_363 3 5 0.000333338
Brassica rapa A09 2 CH_bra_117 4 7 0.00000102327
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_124 3 3 0.00000467837
Camellia sinensis var. sinensis Chr7 2 CH_camsi_165 5 10 0.000000000990066
Camellia sinensis var. sinensis Chr8 2 CH_camsi_565 5 72 0.0000533528
Cannabis sativa NC_044377.1 2 CH_cansat_260 3 5 0.000130766
Capsicum annuum PGAv.1.6.scaffold370 2 CH_can_454 3 8 0.000880076
Cicer arietinum L. Ca_LG6_v3 2 CH_car_129 3 4 0.0000559405
Corylus avellana 2 2 CH_cav_48 5 8 0.000000000168543
Coffea canephora chr6 2 CH_ccan_40 5 39 0.000000000047754
Citrus clementina scaffold_2 2 CH_ccl_261 3 3 0.0000409819
Citrus clementina scaffold_9 2 CH_ccl_428 3 5 0.000409105
Carpinus fangiana Cfa01 2 CH_cfa_151 3 3 0.00000391479
Cardamine hirsuta Chr1 2 CH_chi_96 5 11 0.0000000158529
Carica papaya supercontig_103 2 CH_cpa_111 3 3 0.00000921875
Chenopodium quinoa C_Quinoa_Scaffold_1829 2 CH_cqu_85 6 26 0.000000000461822
Capsella rubella scaffold_5 2 CH_cru_236 3 3 0.000052485
Davidia involucrata GWHABJS00000020 2 CH_din_65 6 26 0.000000000284648
Davidia involucrata GWHABJS00000001 2 CH_din_68 5 11 0.00000000114887
Durio zibethinus NW_019167982.1 2 CH_dzi_130 5 28 0.00000146123
Durio zibethinus NW_019168470.1 2 CH_dzi_30 6 9 0.000000000000938227
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_39 6 14 0.00000000000066551
Eucalyptus grandis Chr04 2 CH_egr_13 17 24 1.59015e-37
Eucalyptus grandis Chr03 2 CH_egr_171 7 8 0.00000000000002452
Eucalyptus grandis Chr02 2 CH_egr_377 5 7 0.0000000192076
Eucalyptus grandis Chr05 2 CH_egr_79 11 19 2.10659e-21
Erythranthe guttata scaffold_11 2 CH_egut_471 3 8 0.000786477
Fragaria x ananassa Fvb3-3 2 CH_fan_366 4 14 0.0000654621
Fragaria x ananassa Fvb6-4 2 CH_fan_372 3 3 0.0000757223
Gossypium hirsutum D05 2 CH_ghi_18 11 21 3.51788e-23
Gossypium hirsutum A04 2 CH_ghi_331 4 6 0.00000149592
Gossypium hirsutum D04 2 CH_ghi_76 6 6 0.000000000000106953
Gossypium hirsutum A05 2 CH_ghi_94 6 8 0.00000000000298939
Glycine max Gm12 2 CH_gma_26 8 10 6.22083e-18
Glycine max Gm06 2 CH_gma_8 17 61 5.28825e-32
Gossypium raimondii Chr09 2 CH_gra_40 7 13 0.0000000000000491367
Gossypium raimondii Chr12 2 CH_gra_88 5 7 0.000000000748017
Helianthus annuus HanXRQChr16 2 CH_han_28 8 10 1.16012e-18
Helianthus annuus HanXRQChr17 2 CH_han_6 12 12 1.06648e-32
Hydrangea macrophylla Hma1.2p1_0155F.1 2 CH_hma_16 5 5 0.0000000000384434
Hydrangea macrophylla Hma1.2p1_0178F.1 2 CH_hma_25 8 79 0.000000000795722
Lupinus albus Lalb_Chr01 2 CH_lal_155 3 3 0.0000135355
Lupinus albus Lalb_Chr11 2 CH_lal_159 4 17 0.0000209896
Lotus japonicus chr3 2 CH_lja_14 8 11 2.90407e-18
Lonicera japonica GWHAAZE00000008 2 CH_lonja_103 5 5 0.0000000000420596
Lonicera japonica GWHAAZE00000001 2 CH_lonja_257 4 7 0.00000148595
Lonicera japonica GWHAAZE00000001 2 CH_lonja_568 3 5 0.000417356
Lonicera japonica GWHAAZE00000004 2 CH_lonja_98 6 10 0.0000000000084364
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_290 3 3 0.0000129833
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_76 5 5 0.00000000000514598
Magnolia biondii Chr07 2 CH_mbi_17 7 10 3.94464e-18
Malus domestica Chr17 2 CH_mdo_155 5 9 0.00000000457726
Malus domestica Chr10 2 CH_mdo_244 4 6 0.000000612368
Malus domestica Chr05 2 CH_mdo_313 4 9 0.0000051326
Manihot esculenta Chromosome16 2 CH_mes_240 4 9 0.00000566097
Manihot esculenta Chromosome17 2 CH_mes_259 4 12 0.0000221838
Nelumbo nucifera chr1 2 CH_nnu_11 8 15 1.93871e-19
Nicotiana tabacum Nitab4.5_0000681 2 CH_nta_175 3 16 0.000846267
Olea europaea chr16 2 CH_oeu_124 3 3 0.0000156175
Olea europaea chr21 2 CH_oeu_3 10 18 2.17911e-23
Punica granatum NC_045131.1 2 CH_pgr_12 10 33 6.40383e-19
Prunus persica Pp03 2 CH_ppe_124 6 22 0.000000000679954
Prunus persica Pp04 2 CH_ppe_288 3 3 0.0000191986
Pisum sativum chr1LG6 2 CH_psa_154 3 3 0.00000277552
Populus trichocarpa Chr07 2 CH_ptr_148 5 10 0.0000000138226
Populus trichocarpa Chr04 2 CH_ptr_38 8 12 2.57724e-17
Phaseolus vulgaris Chr11 2 CH_pvu_11 13 46 1.32912e-23
Phaseolus vulgaris Chr11 2 CH_pvu_97 5 8 0.00000000531995
Quercus lobata 4 2 CH_qlo_78 7 7 3.92339e-18
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_230 6 35 0.0000000189414
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_637 4 24 0.000223259
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_746 3 6 0.000546355
Rhododendron simsii chr03 2 CH_rsi_295 3 3 0.0000182711
Rhododendron simsii chr13 2 CH_rsi_73 6 11 0.00000000000343377
Solanum lycopersicum SL4.0ch02 2 CH_sly_245 4 14 0.0000105969
Solanum lycopersicum SL4.0ch02 2 CH_sly_252 3 3 0.0000151153
Solanum lycopersicum SL4.0ch12 2 CH_sly_253 3 3 0.0000151153
Schrenkiella parvula ch1-1 2 CH_spa_148 3 3 0.0000241772
Schrenkiella parvula ch3-1 2 CH_spa_149 3 3 0.0000241772
Solanum pennellii Spenn-ch12 2 CH_spe_222 3 3 0.0000120486
Solanum pennellii Spenn-ch02 2 CH_spe_34 7 16 0.0000000000000141466
Solanum pennellii Spenn-ch02 2 CH_spe_401 3 6 0.000240631
Solanum tuberosum ST4.03ch12 2 CH_stu_306 3 3 0.000010242
Solanum tuberosum ST4.03ch02 2 CH_stu_52 7 17 0.0000000000000181696
Theobroma cacao Chromosome_6 2 CH_tca_120 6 33 0.00000000914542
Tripterygium wilfordii NC_052240.1 2 CH_twi_166 3 4 0.0000393315
Tripterygium wilfordii NC_052252.1 2 CH_twi_304 3 5 0.000784838
Tripterygium wilfordii NC_052233.1 2 CH_twi_54 5 6 0.000000000218069
Utricularia gibba unitig_699 2 CH_ugi_1 12 15 4.47494e-29
Utricularia gibba unitig_85 2 CH_ugi_6 7 9 0.00000000000000371358
Vigna mungo CM024076.1 2 CH_vmu_48 6 22 0.000000000554386
Vigna mungo CM024076.1 2 CH_vmu_55 5 11 0.00000000485851
Vanilla planifolia CM028150.1 2 CH_vpl_84 3 3 0.0000037262
Vitis vinifera chr18 2 CH_vvi_225 4 14 0.00000636998
Vitis vinifera chr12 2 CH_vvi_78 5 6 0.0000000000233467
Zea mays 9 2 CH_zma_166 3 4 0.000063654

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001