Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).HRD1 E3 ubiquitin ligase complex.adaptor protein component HRD3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr9 1 CH_acertr_172 3 11 0.00000122973
Brassica napus C02 1 CH_bna_505 2 2 0.000111309
Manihot esculenta Chromosome06 1 CH_mes_339 2 3 0.000183184
Pisum sativum chr4LG4 1 CH_psa_263 2 3 0.000156486
Quercus lobata 10 1 CH_qlo_643 2 2 0.0000516289
Trochodendron aralioides group0 1 CH_tar_329 2 2 0.00018011
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_212 2 2 0.0000929238
Acer truncatum chr9 2 CH_acertr_172 3 11 0.00000122973
Manihot esculenta Chromosome06 2 CH_mes_339 2 3 0.000183184
Pisum sativum chr4LG4 2 CH_psa_263 2 3 0.000156486
Quercus lobata 10 2 CH_qlo_643 2 2 0.0000516289
Trochodendron aralioides group0 2 CH_tar_329 2 2 0.00018011
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_212 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001