Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.component UFD1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr3 1 CH_camsi_363 3 6 0.00000126134
Capsicum annuum PGAv.1.6.scaffold170 1 CH_can_268 2 2 0.0000826105
Medicago truncatula chr4 1 CH_mtr_260 3 4 0.0000000405134
Quercus lobata 7 1 CH_qlo_506 3 7 0.00000139908
Rhododendron simsii chr03 1 CH_rsi_486 2 2 0.000387184
Solanum tuberosum ST4.03ch01 1 CH_stu_378 2 2 0.0000512453
Theobroma cacao Chromosome_3 1 CH_tca_265 3 16 0.0000450048
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_75 3 3 0.0000000343818
Camellia sinensis var. sinensis Chr3 2 CH_camsi_363 3 6 0.00000126134
Capsicum annuum PGAv.1.6.scaffold170 2 CH_can_268 2 2 0.0000826105
Quercus lobata 7 2 CH_qlo_506 3 7 0.00000139908
Rhododendron simsii chr03 2 CH_rsi_486 2 2 0.000387184
Solanum tuberosum ST4.03ch01 2 CH_stu_378 2 2 0.0000512453
Theobroma cacao Chromosome_3 2 CH_tca_265 3 16 0.0000450048
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_75 3 3 0.0000000343818

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001