Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (FBX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 1 CH_aar_38 6 9 0.000000000166258
Acer truncatum chr1 1 CH_acertr_212 4 6 0.0000113236
Acer truncatum chr13 1 CH_acertr_36 8 23 0.00000000000747137
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_115 8 14 0.00000000000344108
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_173 6 8 0.00000000290076
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_40 14 46 3.19699e-19
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_6 25 37 8.20864e-49
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_7 25 37 8.20864e-49
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_702 4 8 0.000633141
Brassica carinata ChrC02 1 CH_bca_547 4 7 0.0000242526
Brassica napus C07 1 CH_bna_358 4 6 0.00000874422
Beta vulgaris Scaffold_0006 1 CH_bvu_250 5 37 0.000378594
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_304 3 4 0.00090752
Camellia sinensis var. sinensis Chr10 1 CH_camsi_946 3 4 0.000850836
Cannabis sativa NC_044371.1 1 CH_cansat_157 4 6 0.0000018943
Capsicum annuum PGAv.1.6.scaffold623 1 CH_can_162 6 17 0.000000562308
Capsicum annuum PGAv.1.6.scaffold943 1 CH_can_202 5 11 0.00000621449
Capsicum annuum PGAv.1.6.scaffold500 1 CH_can_57 7 10 0.0000000000189103
Cicer arietinum L. Ca_LG4_v3 1 CH_car_75 4 5 0.0000011526
Corylus avellana 2 1 CH_cav_224 4 8 0.0000764692
Coffea canephora chr4 1 CH_ccan_370 3 19 0.000812319
Citrus clementina scaffold_8 1 CH_ccl_356 5 28 0.000146586
Cardamine hirsuta Chr8 1 CH_chi_85 5 6 0.00000000391848
Carya illinoinensis Chr07 1 CH_cil_156 5 5 0.000000000844189
Corchorus olitorius AWUE01015440.1 1 CH_col_17 5 5 0.00000000648952
Chenopodium quinoa C_Quinoa_Scaffold_4383 1 CH_cqu_185 5 8 0.000000337331
Chenopodium quinoa C_Quinoa_Scaffold_1862 1 CH_cqu_598 3 3 0.000853572
Daucus carota DCARv2_Chr5 1 CH_dca_123 5 8 0.000000255113
Daucus carota DCARv2_Chr1 1 CH_dca_42 6 6 0.0000000000119932
Davidia involucrata GWHABJS00000015 1 CH_din_166 7 42 0.000001609
Davidia involucrata GWHABJS00000009 1 CH_din_283 4 7 0.000100107
Durio zibethinus NW_019168270.1 1 CH_dzi_154 4 5 0.00000416649
Erythranthe guttata scaffold_14 1 CH_egut_100 7 12 0.00000000119607
Erythranthe guttata scaffold_10 1 CH_egut_101 7 12 0.00000000119607
Erythranthe guttata scaffold_3 1 CH_egut_126 6 8 0.00000000918514
Erythranthe guttata scaffold_2 1 CH_egut_447 4 7 0.000514628
Erythranthe guttata scaffold_14 1 CH_egut_53 10 27 0.00000000000117059
Erythranthe guttata scaffold_3 1 CH_egut_72 7 9 0.0000000000550381
Erythranthe guttata scaffold_6 1 CH_egut_83 6 6 0.000000000330702
Fragaria vesca Fvb3 1 CH_fve_180 5 8 0.000000804766
Fragaria vesca Fvb6 1 CH_fve_238 6 29 0.0000210985
Fragaria vesca Fvb6 1 CH_fve_425 5 23 0.000463976
Gossypium hirsutum A06 1 CH_ghi_210 5 6 0.0000000254612
Gossypium hirsutum D06 1 CH_ghi_349 4 4 0.00000191822
Gossypium hirsutum A08 1 CH_ghi_39 9 11 5.28913e-18
Gossypium hirsutum D08 1 CH_ghi_63 8 10 0.0000000000000020007
Glycine max Gm18 1 CH_gma_227 7 47 0.00000160524
Glycine max Gm03 1 CH_gma_234 4 4 0.00000198219
Glycine max Gm16 1 CH_gma_274 4 5 0.00000989148
Glycine max Gm19 1 CH_gma_350 4 7 0.0000689689
Glycine max Gm07 1 CH_gma_623 3 3 0.000809638
Glycine max Gm06 1 CH_gma_624 3 3 0.000809638
Gossypium raimondii Chr10 1 CH_gra_30 8 10 0.00000000000000200113
Gossypium raimondii Chr04 1 CH_gra_9 10 11 2.57569e-21
Helianthus annuus HanXRQChr02 1 CH_han_101 9 27 0.0000000000107943
Helianthus annuus HanXRQChr13 1 CH_han_155 6 7 0.000000000495176
Helianthus annuus HanXRQChr04 1 CH_han_408 4 5 0.0000325924
Helianthus annuus HanXRQChr15 1 CH_han_53 9 16 0.0000000000000272049
Helianthus annuus HanXRQChr13 1 CH_han_740 4 9 0.000812619
Lotus japonicus chr1 1 CH_lja_13 9 10 1.76499e-18
Lotus japonicus chr6 1 CH_lja_177 4 4 0.00000156486
Lonicera japonica GWHAAZE00000006 1 CH_lonja_325 4 5 0.0000272954
Lonicera japonica GWHAAZE00000002 1 CH_lonja_414 4 6 0.0000816542
Lonicera japonica GWHAAZE00000003 1 CH_lonja_420 5 17 0.000114597
Lonicera japonica GWHAAZE00000006 1 CH_lonja_578 6 45 0.000483106
Lonicera japonica GWHAAZE00000003 1 CH_lonja_625 4 9 0.000680084
Lonicera japonica GWHAAZE00000001 1 CH_lonja_71 13 77 0.0000000000000433507
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_109 8 34 0.000000000625678
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_322 4 7 0.0000451405
Malus domestica Chr10 1 CH_mdo_293 4 5 0.00000260054
Malus domestica Chr03 1 CH_mdo_328 4 6 0.00000779071
Medicago truncatula chr4 1 CH_mtr_151 9 24 0.0000000000471503
Medicago truncatula chr3 1 CH_mtr_172 10 44 0.000000000366032
Medicago truncatula chr3 1 CH_mtr_242 6 8 0.0000000120058
Medicago truncatula chr3 1 CH_mtr_245 9 44 0.0000000235984
Medicago truncatula chr4 1 CH_mtr_329 6 12 0.00000039011
Medicago truncatula chr7 1 CH_mtr_381 6 15 0.00000208874
Medicago truncatula chr5 1 CH_mtr_546 5 11 0.0000433756
Medicago truncatula chr2 1 CH_mtr_570 4 5 0.000105856
Medicago truncatula chr2 1 CH_mtr_571 4 5 0.000105856
Nicotiana tabacum Nitab4.5_0000191 1 CH_nta_156 4 12 0.000409038
Nicotiana tabacum Nitab4.5_0000059 1 CH_nta_55 6 27 0.00000141892
Olea europaea chr7 1 CH_oeu_338 3 3 0.000364664
Petunia axillaris Peaxi162Scf00421 1 CH_pax_135 4 4 0.00000377438
Petunia axillaris Peaxi162Scf00597 1 CH_pax_281 4 8 0.000261385
Petunia axillaris Peaxi162Scf00231 1 CH_pax_37 7 12 0.000000000103226
Punica granatum NC_045133.1 1 CH_pgr_143 5 14 0.00000234674
Punica granatum NC_045131.1 1 CH_pgr_150 4 5 0.00000287966
Punica granatum NC_045128.1 1 CH_pgr_295 3 3 0.000274566
Prunus persica Pp01 1 CH_ppe_495 3 3 0.000685807
Papaver somniferum NC_039361.1 1 CH_pso_142 11 67 0.00000000110116
Papaver somniferum NC_039365.1 1 CH_pso_205 8 27 0.0000000266774
Papaver somniferum NC_039367.1 1 CH_pso_301 5 6 0.000000912963
Papaver somniferum NW_020619603.1 1 CH_pso_617 5 15 0.000442029
Papaver somniferum NC_039358.1 1 CH_pso_618 5 15 0.000442029
Papaver somniferum NC_039368.1 1 CH_pso_640 4 6 0.00051524
Papaver somniferum NC_039366.1 1 CH_pso_87 10 25 0.000000000000759116
Phaseolus vulgaris Chr01 1 CH_pvu_134 5 9 0.0000000952205
Quercus lobata 11 1 CH_qlo_1002 4 8 0.00073145
Quercus lobata 4 1 CH_qlo_207 11 51 0.00000000000626667
Quercus lobata 9 1 CH_qlo_238 10 44 0.0000000000867508
Quercus lobata 4 1 CH_qlo_258 10 49 0.000000000282254
Quercus lobata 4 1 CH_qlo_322 9 42 0.00000000404096
Quercus lobata 7 1 CH_qlo_552 5 9 0.00000526611
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_24 13 20 2.6002e-24
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_418 7 54 0.0000126967
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_82 8 12 0.000000000000110101
Rhododendron simsii chr13 1 CH_rsi_18 15 26 4.63917e-29
Rhododendron simsii chr01 1 CH_rsi_312 4 7 0.0000379679
Striga asiatica scaffold43 1 CH_sas_73 4 9 0.0000746842
Salvia bowleyana GWHASIU00000008 1 CH_sbo_462 3 3 0.000727032
Salvia bowleyana GWHASIU00000001 1 CH_sbo_66 11 75 0.000000000003685
Salvia bowleyana GWHASIU00000001 1 CH_sbo_96 7 19 0.00000000132546
Simmondsia chinensis GWHAASQ00000005 1 CH_sci_89 5 12 0.00000154188
Sechium edule LG07 1 CH_sed_99 4 4 0.000000495832
Sequoiadendron giganteum chr1 1 CH_sgi_1184 3 4 0.0002307
Sequoiadendron giganteum chr8 1 CH_sgi_335 5 6 0.000000000388471
Schrenkiella parvula ch6-1 1 CH_spa_125 4 5 0.00000268478
Solanum tuberosum ST4.03ch09 1 CH_stu_130 9 53 0.00000000716425
Solanum tuberosum ST4.03ch05 1 CH_stu_249 5 9 0.00000207187
Trochodendron aralioides group3 1 CH_tar_159 5 9 0.000000632496
Trochodendron aralioides group14 1 CH_tar_179 4 4 0.00000189563
Trochodendron aralioides group9 1 CH_tar_203 4 5 0.00000945758
Theobroma cacao Chromosome_4 1 CH_tca_137 5 7 0.0000000344311
Tarenaya hassleriana NW_010966177.1 1 CH_tha_4 9 10 3.9535e-19
Tripterygium wilfordii NC_052235.1 1 CH_twi_261 3 3 0.000444246
Tripterygium wilfordii NC_052235.1 1 CH_twi_262 3 3 0.000444246
Utricularia gibba unitig_8 1 CH_ugi_242 3 4 0.000399131
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_284 4 10 0.0000973855
Vigna mungo CM024071.1 1 CH_vmu_256 3 3 0.000164301
Aethionema arabicum LG-2 2 CH_aar_38 6 9 0.000000000166258
Acer truncatum chr1 2 CH_acertr_212 4 6 0.0000113236
Acer truncatum chr13 2 CH_acertr_36 8 23 0.00000000000747137
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_115 8 14 0.00000000000344108
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_173 6 8 0.00000000290076
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_40 14 46 3.19699e-19
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_6 25 37 8.20864e-49
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_7 25 37 8.20864e-49
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_702 4 8 0.000633141
Brassica carinata ChrC02 2 CH_bca_547 4 7 0.0000242526
Beta vulgaris Scaffold_0006 2 CH_bvu_250 5 37 0.000378594
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_304 3 4 0.00090752
Camellia sinensis var. sinensis Chr10 2 CH_camsi_946 3 4 0.000850836
Cannabis sativa NC_044371.1 2 CH_cansat_157 4 6 0.0000018943
Capsicum annuum PGAv.1.6.scaffold623 2 CH_can_162 6 17 0.000000562308
Capsicum annuum PGAv.1.6.scaffold943 2 CH_can_202 5 11 0.00000621449
Capsicum annuum PGAv.1.6.scaffold500 2 CH_can_57 7 10 0.0000000000189103
Cicer arietinum L. Ca_LG4_v3 2 CH_car_75 4 5 0.0000011526
Corylus avellana 2 2 CH_cav_224 4 8 0.0000764692
Coffea canephora chr4 2 CH_ccan_370 3 19 0.000812319
Citrus clementina scaffold_8 2 CH_ccl_356 5 28 0.000146586
Cardamine hirsuta Chr8 2 CH_chi_85 5 6 0.00000000391848
Carya illinoinensis Chr07 2 CH_cil_156 5 5 0.000000000844189
Corchorus olitorius AWUE01015440.1 2 CH_col_17 5 5 0.00000000648952
Chenopodium quinoa C_Quinoa_Scaffold_4383 2 CH_cqu_185 5 8 0.000000337331
Chenopodium quinoa C_Quinoa_Scaffold_1862 2 CH_cqu_598 3 3 0.000853572
Daucus carota DCARv2_Chr5 2 CH_dca_123 5 8 0.000000255113
Daucus carota DCARv2_Chr1 2 CH_dca_42 6 6 0.0000000000119932
Davidia involucrata GWHABJS00000015 2 CH_din_166 7 42 0.000001609
Davidia involucrata GWHABJS00000009 2 CH_din_283 4 7 0.000100107
Durio zibethinus NW_019168270.1 2 CH_dzi_154 4 5 0.00000416649
Eucalyptus grandis Chr08 2 CH_egr_360 7 34 0.00000000715377
Eucalyptus grandis Chr08 2 CH_egr_502 5 13 0.000000666437
Erythranthe guttata scaffold_14 2 CH_egut_100 7 12 0.00000000119607
Erythranthe guttata scaffold_10 2 CH_egut_101 7 12 0.00000000119607
Erythranthe guttata scaffold_3 2 CH_egut_126 6 8 0.00000000918514
Erythranthe guttata scaffold_2 2 CH_egut_447 4 7 0.000514628
Erythranthe guttata scaffold_14 2 CH_egut_53 10 27 0.00000000000117059
Erythranthe guttata scaffold_3 2 CH_egut_72 7 9 0.0000000000550381
Erythranthe guttata scaffold_6 2 CH_egut_83 6 6 0.000000000330702
Fragaria vesca Fvb3 2 CH_fve_180 5 8 0.000000804766
Fragaria vesca Fvb6 2 CH_fve_238 6 29 0.0000210985
Fragaria vesca Fvb6 2 CH_fve_425 5 23 0.000463976
Gossypium hirsutum A06 2 CH_ghi_210 5 6 0.0000000254612
Gossypium hirsutum D06 2 CH_ghi_349 4 4 0.00000191822
Gossypium hirsutum A08 2 CH_ghi_39 9 11 5.28913e-18
Gossypium hirsutum D08 2 CH_ghi_63 8 10 0.0000000000000020007
Glycine max Gm18 2 CH_gma_227 7 47 0.00000160524
Glycine max Gm03 2 CH_gma_234 4 4 0.00000198219
Glycine max Gm16 2 CH_gma_274 4 5 0.00000989148
Glycine max Gm19 2 CH_gma_350 4 7 0.0000689689
Glycine max Gm07 2 CH_gma_623 3 3 0.000809638
Glycine max Gm06 2 CH_gma_624 3 3 0.000809638
Gossypium raimondii Chr10 2 CH_gra_30 8 10 0.00000000000000200113
Gossypium raimondii Chr04 2 CH_gra_9 10 11 2.57569e-21
Helianthus annuus HanXRQChr02 2 CH_han_101 9 27 0.0000000000107943
Helianthus annuus HanXRQChr13 2 CH_han_155 6 7 0.000000000495176
Helianthus annuus HanXRQChr04 2 CH_han_408 4 5 0.0000325924
Helianthus annuus HanXRQChr15 2 CH_han_53 9 16 0.0000000000000272049
Helianthus annuus HanXRQChr13 2 CH_han_740 4 9 0.000812619
Lotus japonicus chr1 2 CH_lja_13 9 10 1.76499e-18
Lotus japonicus chr6 2 CH_lja_177 4 4 0.00000156486
Lotus japonicus chr2 2 CH_lja_214 4 5 0.00000780747
Lotus japonicus chr6 2 CH_lja_387 3 3 0.000583526
Lonicera japonica GWHAAZE00000006 2 CH_lonja_325 4 5 0.0000272954
Lonicera japonica GWHAAZE00000002 2 CH_lonja_414 4 6 0.0000816542
Lonicera japonica GWHAAZE00000003 2 CH_lonja_420 5 17 0.000114597
Lonicera japonica GWHAAZE00000006 2 CH_lonja_578 6 45 0.000483106
Lonicera japonica GWHAAZE00000003 2 CH_lonja_625 4 9 0.000680084
Lonicera japonica GWHAAZE00000001 2 CH_lonja_71 13 77 0.0000000000000433507
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_109 8 34 0.000000000625678
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_322 4 7 0.0000451405
Malus domestica Chr10 2 CH_mdo_293 4 5 0.00000260054
Malus domestica Chr03 2 CH_mdo_328 4 6 0.00000779071
Nicotiana tabacum Nitab4.5_0000191 2 CH_nta_156 4 12 0.000409038
Nicotiana tabacum Nitab4.5_0000059 2 CH_nta_55 6 27 0.00000141892
Olea europaea chr7 2 CH_oeu_338 3 3 0.000364664
Petunia axillaris Peaxi162Scf00421 2 CH_pax_135 4 4 0.00000377438
Petunia axillaris Peaxi162Scf00597 2 CH_pax_281 4 8 0.000261385
Petunia axillaris Peaxi162Scf00231 2 CH_pax_37 7 12 0.000000000103226
Punica granatum NC_045133.1 2 CH_pgr_143 5 14 0.00000234674
Punica granatum NC_045131.1 2 CH_pgr_150 4 5 0.00000287966
Punica granatum NC_045128.1 2 CH_pgr_295 3 3 0.000274566
Prunus persica Pp01 2 CH_ppe_495 3 3 0.000685807
Papaver somniferum NC_039361.1 2 CH_pso_142 11 67 0.00000000110116
Papaver somniferum NC_039365.1 2 CH_pso_205 8 27 0.0000000266774
Papaver somniferum NC_039367.1 2 CH_pso_301 5 6 0.000000912963
Papaver somniferum NW_020619603.1 2 CH_pso_617 5 15 0.000442029
Papaver somniferum NC_039358.1 2 CH_pso_618 5 15 0.000442029
Papaver somniferum NC_039368.1 2 CH_pso_640 4 6 0.00051524
Papaver somniferum NC_039366.1 2 CH_pso_87 10 25 0.000000000000759116
Phaseolus vulgaris Chr01 2 CH_pvu_134 5 9 0.0000000952205
Quercus lobata 11 2 CH_qlo_1002 4 8 0.00073145
Quercus lobata 4 2 CH_qlo_207 11 51 0.00000000000626667
Quercus lobata 9 2 CH_qlo_238 10 44 0.0000000000867508
Quercus lobata 4 2 CH_qlo_258 10 49 0.000000000282254
Quercus lobata 4 2 CH_qlo_322 9 42 0.00000000404096
Quercus lobata 7 2 CH_qlo_552 5 9 0.00000526611
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_24 13 20 2.6002e-24
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_418 7 54 0.0000126967
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_82 8 12 0.000000000000110101
Rhododendron simsii chr13 2 CH_rsi_18 15 26 4.63917e-29
Rhododendron simsii chr01 2 CH_rsi_312 4 7 0.0000379679
Striga asiatica scaffold43 2 CH_sas_73 4 9 0.0000746842
Salvia bowleyana GWHASIU00000008 2 CH_sbo_462 3 3 0.000727032
Salvia bowleyana GWHASIU00000001 2 CH_sbo_66 11 75 0.000000000003685
Salvia bowleyana GWHASIU00000001 2 CH_sbo_96 7 19 0.00000000132546
Simmondsia chinensis GWHAASQ00000005 2 CH_sci_89 5 12 0.00000154188
Sechium edule LG07 2 CH_sed_99 4 4 0.000000495832
Sequoiadendron giganteum chr1 2 CH_sgi_1184 3 4 0.0002307
Sequoiadendron giganteum chr8 2 CH_sgi_335 5 6 0.000000000388471
Schrenkiella parvula ch6-1 2 CH_spa_125 4 5 0.00000268478
Solanum tuberosum ST4.03ch09 2 CH_stu_130 9 53 0.00000000716425
Solanum tuberosum ST4.03ch05 2 CH_stu_249 5 9 0.00000207187
Trochodendron aralioides group3 2 CH_tar_159 5 9 0.000000632496
Trochodendron aralioides group14 2 CH_tar_179 4 4 0.00000189563
Trochodendron aralioides group9 2 CH_tar_203 4 5 0.00000945758
Theobroma cacao Chromosome_4 2 CH_tca_137 5 7 0.0000000344311
Tarenaya hassleriana NW_010966177.1 2 CH_tha_4 9 10 3.9535e-19
Tripterygium wilfordii NC_052235.1 2 CH_twi_261 3 3 0.000444246
Tripterygium wilfordii NC_052235.1 2 CH_twi_262 3 3 0.000444246
Utricularia gibba unitig_8 2 CH_ugi_242 3 4 0.000399131
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_284 4 10 0.0000973855
Vigna mungo CM024071.1 2 CH_vmu_256 3 3 0.000164301

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001