Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (UFO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_325 2 2 0.0000514007
Prunus persica Pp04 1 CH_ppe_383 2 3 0.00022378
Simmondsia chinensis GWHAASQ00000024 1 CH_sci_138 2 2 0.0000851426
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_325 2 2 0.0000514007
Prunus persica Pp04 2 CH_ppe_383 2 3 0.00022378
Simmondsia chinensis GWHAASQ00000024 2 CH_sci_138 2 2 0.0000851426

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001