Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin receptor regulatory protein (DA1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_267 2 2 0.000912326
Arabidopsis lyrata scaffold_8 1 CH_aly_50 4 5 0.000000000150964
Arabidopsis thaliana Chr5 1 CH_ath_50 4 6 0.0000000000740652
Brassica carinata ChrC04 1 CH_bca_148 4 6 0.00000000321442
Brassica napus C09 1 CH_bna_92 4 5 0.000000000463958
Brassica oleracea C9 1 CH_bol_115 3 3 0.000000264429
Capsicum annuum PGAv.1.6.scaffold523 1 CH_can_396 2 2 0.000495663
Cardamine hirsuta Chr8 1 CH_chi_127 3 3 0.000000143334
Carya illinoinensis Chr01 1 CH_cil_148 4 5 0.000000000450038
Capsella rubella scaffold_8 1 CH_cru_165 3 4 0.000000641451
Hydrangea macrophylla Hma1.2p1_0026F.1 1 CH_hma_343 2 2 0.000333259
Prunus persica Pp06 1 CH_ppe_229 3 4 0.00000186944
Populus trichocarpa Chr05 1 CH_ptr_536 2 2 0.000867002
Quercus lobata 6 1 CH_qlo_384 3 3 0.0000000399842
Simmondsia chinensis GWHAASQ00000015 1 CH_sci_300 2 2 0.000851426
Solanum pennellii Spenn-ch01 1 CH_spe_503 2 2 0.000667186
Vitis vinifera chr4 1 CH_vvi_379 2 2 0.000456378
Aethionema arabicum LG-1 2 CH_aar_267 2 2 0.000912326
Arabidopsis lyrata scaffold_8 2 CH_aly_50 4 5 0.000000000150964
Arabidopsis thaliana Chr5 2 CH_ath_50 4 6 0.0000000000740652
Brassica carinata ChrC04 2 CH_bca_148 4 6 0.00000000321442
Brassica oleracea C9 2 CH_bol_115 3 3 0.000000264429
Capsicum annuum PGAv.1.6.scaffold523 2 CH_can_396 2 2 0.000495663
Cardamine hirsuta Chr8 2 CH_chi_127 3 3 0.000000143334
Carya illinoinensis Chr01 2 CH_cil_148 4 5 0.000000000450038
Capsella rubella scaffold_8 2 CH_cru_165 3 4 0.000000641451
Eucalyptus grandis Chr08 2 CH_egr_484 3 3 0.000000287747
Hydrangea macrophylla Hma1.2p1_0026F.1 2 CH_hma_343 2 2 0.000333259
Prunus persica Pp06 2 CH_ppe_229 3 4 0.00000186944
Populus trichocarpa Chr05 2 CH_ptr_536 2 2 0.000867002
Quercus lobata 6 2 CH_qlo_384 3 3 0.0000000399842
Simmondsia chinensis GWHAASQ00000015 2 CH_sci_300 2 2 0.000851426
Solanum pennellii Spenn-ch01 2 CH_spe_503 2 2 0.000667186
Vitis vinifera chr4 2 CH_vvi_379 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001