Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).polyubiquitination.ligating E3 protein (RGLG)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 1 | CH_aag_128 | 2 | 2 | 0.00024077 |
| Amborella trichopoda | AmTr_v1.0_scaffold00061 | 1 | CH_atr_285 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC03 | 1 | CH_bca_561 | 3 | 6 | 0.0000315123 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_334 | 3 | 3 | 0.000000693893 |
| Carya illinoinensis | Chr15 | 1 | CH_cil_295 | 3 | 5 | 0.0000069129 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_210 | 3 | 3 | 0.00000227463 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_49 | 5 | 5 | 0.0000000000002714 |
| Lactuca sativa | Lsat_1_v8_lg_0 | 1 | CH_lsa_248 | 3 | 5 | 0.00000221882 |
| Medicago truncatula | chr2 | 1 | CH_mtr_226 | 4 | 7 | 0.00000000993524 |
| Nelumbo nucifera | chr7 | 1 | CH_nnu_126 | 3 | 3 | 0.00000103802 |
| Nelumbo nucifera | chr3 | 1 | CH_nnu_127 | 3 | 3 | 0.00000103802 |
| Nicotiana tabacum | Nitab4.5_0000691 | 1 | CH_nta_73 | 3 | 8 | 0.0000202104 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_84 | 6 | 74 | 0.000000000372494 |
| Sechium edule | LG04 | 1 | CH_sed_139 | 3 | 4 | 0.00000671675 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_71 | 7 | 7 | 3.79049e-23 |
| Tarenaya hassleriana | NW_010961290.1 | 1 | CH_tha_25 | 5 | 19 | 0.000000000521858 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_412 | 2 | 2 | 0.000929238 |
| Anthoceros agrestis | Sc2ySwM_344 | 2 | CH_aag_128 | 2 | 2 | 0.00024077 |
| Amborella trichopoda | AmTr_v1.0_scaffold00061 | 2 | CH_atr_285 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC03 | 2 | CH_bca_561 | 3 | 6 | 0.0000315123 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_334 | 3 | 3 | 0.000000693893 |
| Carya illinoinensis | Chr15 | 2 | CH_cil_295 | 3 | 5 | 0.0000069129 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_210 | 3 | 3 | 0.00000227463 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_49 | 5 | 5 | 0.0000000000002714 |
| Lactuca sativa | Lsat_1_v8_lg_0 | 2 | CH_lsa_248 | 3 | 5 | 0.00000221882 |
| Nelumbo nucifera | chr7 | 2 | CH_nnu_126 | 3 | 3 | 0.00000103802 |
| Nelumbo nucifera | chr3 | 2 | CH_nnu_127 | 3 | 3 | 0.00000103802 |
| Nicotiana tabacum | Nitab4.5_0000691 | 2 | CH_nta_73 | 3 | 8 | 0.0000202104 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_84 | 6 | 74 | 0.000000000372494 |
| Sechium edule | LG04 | 2 | CH_sed_139 | 3 | 4 | 0.00000671675 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_71 | 7 | 7 | 3.79049e-23 |
| Tarenaya hassleriana | NW_010961290.1 | 2 | CH_tha_25 | 5 | 19 | 0.000000000521858 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_412 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |