Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.E3 ubiquitin ligase (ARA54)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00048 1 CH_atr_158 2 2 0.0000794407
Citrus clementina scaffold_6 1 CH_ccl_275 2 2 0.0000820311
Carica papaya supercontig_90 1 CH_cpa_152 2 2 0.0000950661
Helianthus annuus HanXRQChr17 1 CH_han_421 2 2 0.0000386429
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_324 2 2 0.0000514007
Papaver somniferum NW_020625264.1 1 CH_pso_156 4 13 0.00000000308665
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_348 2 4 0.00045415
Amborella trichopoda AmTr_v1.0_scaffold00048 2 CH_atr_158 2 2 0.0000794407
Citrus clementina scaffold_6 2 CH_ccl_275 2 2 0.0000820311
Carica papaya supercontig_90 2 CH_cpa_152 2 2 0.0000950661
Helianthus annuus HanXRQChr17 2 CH_han_421 2 2 0.0000386429
Lotus japonicus chr2 2 CH_lja_249 2 2 0.0000715077
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_324 2 2 0.0000514007
Papaver somniferum NW_020625264.1 2 CH_pso_156 4 13 0.00000000308665
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_348 2 4 0.00045415

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001