Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (PIR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB02 1 CH_bca_30 6 22 0.0000000000000599145
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_526 2 2 0.00077101
Rhododendron simsii chr04 1 CH_rsi_216 3 4 0.000000499669
Solanum lycopersicum SL4.0ch10 1 CH_sly_274 3 6 0.0000295368
Solanum lycopersicum SL4.0ch09 1 CH_sly_47 6 10 0.00000000000000564495
Selaginella moellendorffii scaffold_101 1 CH_smo_16 5 10 0.000000000000861769
Solanum pennellii Spenn-ch09 1 CH_spe_42 5 7 0.000000000000155332
Trochodendron aralioides group1 1 CH_tar_133 4 20 0.000000109916
Brassica carinata ChrB02 2 CH_bca_30 6 22 0.0000000000000599145
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_526 2 2 0.00077101
Rhododendron simsii chr04 2 CH_rsi_216 3 4 0.000000499669
Solanum lycopersicum SL4.0ch10 2 CH_sly_274 3 6 0.0000295368
Solanum lycopersicum SL4.0ch09 2 CH_sly_47 6 10 0.00000000000000564495
Selaginella moellendorffii scaffold_101 2 CH_smo_16 5 10 0.000000000000861769
Solanum pennellii Spenn-ch09 2 CH_spe_42 5 7 0.000000000000155332
Trochodendron aralioides group1 2 CH_tar_133 4 20 0.000000109916

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001