Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (BRH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_442 2 2 0.000990066
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 1 CH_amhyb_225 2 2 0.000505051
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_161 2 2 0.0000827917
Camellia sinensis var. sinensis Chr14 1 CH_camsi_170 4 8 0.00000000141688
Gossypium raimondii Chr07 1 CH_gra_168 3 3 0.00000071136
Magnolia biondii Chr11 1 CH_mbi_372 3 19 0.0000684815
Sequoiadendron giganteum chr8 1 CH_sgi_688 3 13 0.0000203461
Trochodendron aralioides group4 1 CH_tar_496 2 2 0.000600366
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_353 2 2 0.000454184
Arabidopsis lyrata scaffold_6 2 CH_aly_442 2 2 0.000990066
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 2 CH_amhyb_225 2 2 0.000505051
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_161 2 2 0.0000827917
Camellia sinensis var. sinensis Chr14 2 CH_camsi_170 4 8 0.00000000141688
Gossypium raimondii Chr07 2 CH_gra_168 3 3 0.00000071136
Magnolia biondii Chr11 2 CH_mbi_372 3 19 0.0000684815
Sequoiadendron giganteum chr8 2 CH_sgi_688 3 13 0.0000203461
Trochodendron aralioides group4 2 CH_tar_496 2 2 0.000600366
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_353 2 2 0.000454184

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001