Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.CTL-subclass ligase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C09 | 1 | CH_bna_362 | 5 | 51 | 0.00000937973 |
| Manihot esculenta | Chromosome08 | 1 | CH_mes_66 | 7 | 28 | 0.00000000000117423 |
| Petunia axillaris | Peaxi162Scf00450 | 1 | CH_pax_76 | 4 | 7 | 0.0000000498672 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_386 | 3 | 16 | 0.000651835 |
| Trochodendron aralioides | group12 | 1 | CH_tar_390 | 3 | 5 | 0.00019732 |
| Vitis vinifera | chr7 | 1 | CH_vvi_83 | 5 | 7 | 0.0000000000612575 |
| Manihot esculenta | Chromosome08 | 2 | CH_mes_66 | 7 | 28 | 0.00000000000117423 |
| Petunia axillaris | Peaxi162Scf00450 | 2 | CH_pax_76 | 4 | 7 | 0.0000000498672 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_386 | 3 | 16 | 0.000651835 |
| Trochodendron aralioides | group12 | 2 | CH_tar_390 | 3 | 5 | 0.00019732 |
| Vitis vinifera | chr7 | 2 | CH_vvi_83 | 5 | 7 | 0.0000000000612575 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |