Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ATL-subclass ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_84 5 6 0.0000000137345
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 1 CH_amhyb_278 3 4 0.000938077
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 1 CH_amhyb_41 5 9 0.0000001225
Aquilegia oxysepala CHR01 1 CH_aox_196 3 3 0.000119068
Arabidopsis thaliana Chr4 1 CH_ath_128 4 4 0.0000000905097
Arabidopsis thaliana Chr1 1 CH_ath_169 4 6 0.00000135537
Arabidopsis thaliana Chr2 1 CH_ath_284 3 3 0.0000865521
Brassica carinata ChrC03 1 CH_bca_1111 4 10 0.000805964
Brassica carinata ChrB05 1 CH_bca_333 5 8 0.000000543009
Brassica carinata ChrC08 1 CH_bca_590 4 6 0.0000580363
Brassica carinata Contig1551 1 CH_bca_591 4 6 0.0000580363
Brassica napus C02 1 CH_bna_290 5 10 0.00000150262
Brassica napus C06 1 CH_bna_497 4 7 0.0000945045
Brassica oleracea C2 1 CH_bol_289 4 9 0.000122863
Brassica rapa A05 1 CH_bra_373 3 3 0.000776441
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_127 4 6 0.00000745399
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_4 10 13 7.19845e-21
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_54 5 5 0.00000000101147
Camellia sinensis var. sinensis Chr3 1 CH_camsi_364 4 5 0.0000014861
Camellia sinensis var. sinensis Chr11 1 CH_camsi_365 4 5 0.0000014861
Cicer arietinum L. Ca_LG6_v3 1 CH_car_196 3 3 0.000157163
Citrus clementina scaffold_7 1 CH_ccl_70 6 9 0.0000000000750767
Carpinus fangiana Cfa04 1 CH_cfa_114 4 4 0.000000276144
Cardamine hirsuta Chr8 1 CH_chi_385 3 3 0.000464574
Carya illinoinensis Chr13 1 CH_cil_500 3 3 0.000405138
Corchorus olitorius AWUE01017966.1 1 CH_col_41 3 3 0.0000211202
Chenopodium quinoa C_Quinoa_Scaffold_3876 1 CH_cqu_133 5 8 0.0000000295039
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_19 10 15 1.36563e-20
Chenopodium quinoa C_Quinoa_Scaffold_3784 1 CH_cqu_293 4 8 0.0000228633
Chenopodium quinoa C_Quinoa_Scaffold_3820 1 CH_cqu_30 9 17 7.37489e-17
Capsella rubella scaffold_6 1 CH_cru_85 5 5 0.00000000279127
Daucus carota DCARv2_Chr1 1 CH_dca_336 3 3 0.000319685
Daucus carota DCARv2_Chr9 1 CH_dca_337 3 3 0.000319685
Durio zibethinus NW_019168470.1 1 CH_dzi_301 3 3 0.000404669
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_131 4 4 0.0000000677407
Erythranthe guttata scaffold_6 1 CH_egut_96 5 5 0.000000000805515
Gossypium hirsutum A05 1 CH_ghi_147 6 9 0.000000000463557
Gossypium hirsutum D04 1 CH_ghi_52 8 9 1.98567e-16
Helianthus annuus HanXRQChr15 1 CH_han_140 7 16 0.000000000114011
Helianthus annuus HanXRQChr02 1 CH_han_240 5 8 0.00000013078
Helianthus annuus HanXRQChr14 1 CH_han_341 5 14 0.00000462628
Helianthus annuus HanXRQChr03 1 CH_han_669 3 3 0.000524453
Lupinus albus Lalb_Chr13 1 CH_lal_386 3 3 0.000628417
Lonicera japonica GWHAAZE00000004 1 CH_lonja_160 6 16 0.00000000929364
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_82 8 29 0.00000000002339
Magnolia biondii Chr09 1 CH_mbi_650 3 5 0.000827282
Magnolia biondii Chr14 1 CH_mbi_79 6 11 0.0000000000641714
Medicago truncatula chr8 1 CH_mtr_116 7 11 0.000000000000668052
Nelumbo nucifera chr6 1 CH_nnu_265 4 13 0.0000343536
Nelumbo nucifera chr1 1 CH_nnu_309 4 17 0.000113991
Oryza sativa ssp. japonica chr02 1 CH_osa_185 4 8 0.0000250548
Oryza sativa ssp. japonica chr02 1 CH_osa_57 6 11 0.000000000464231
Petunia axillaris Peaxi162Scf00025 1 CH_pax_224 3 3 0.000136801
Pisum sativum chr7LG7 1 CH_psa_16 10 31 4.6751e-16
Papaver somniferum NC_039363.1 1 CH_pso_277 4 5 0.00000038122
Papaver somniferum NC_039358.1 1 CH_pso_688 3 5 0.000805413
Papaver somniferum NC_039358.1 1 CH_pso_94 6 8 0.00000000000184134
Populus trichocarpa Chr10 1 CH_ptr_212 4 4 0.000000784028
Phaseolus vulgaris Chr11 1 CH_pvu_316 4 8 0.0000899197
Quercus lobata 11 1 CH_qlo_53 9 9 6.95214e-21
Quercus lobata 4 1 CH_qlo_84 9 14 1.38132e-17
Rhododendron simsii chr08 1 CH_rsi_152 5 6 0.0000000101434
Rhododendron simsii chr05 1 CH_rsi_31 9 10 3.17142e-19
Salix brachista GWHAAZH00000010 1 CH_sbr_317 3 3 0.000272561
Sequoiadendron giganteum chr1 1 CH_sgi_297 5 6 0.0000000000510142
Sequoiadendron giganteum chr9 1 CH_sgi_646 4 11 0.00000409963
Sequoiadendron giganteum chr4 1 CH_sgi_983 3 4 0.000070588
Solanum lycopersicum SL4.0ch11 1 CH_sly_106 5 5 0.000000000795614
Schrenkiella parvula ch1-1 1 CH_spa_120 4 4 0.00000159389
Solanum pennellii Spenn-ch11 1 CH_spe_178 4 5 0.000000688154
Solanum pennellii Spenn-ch06 1 CH_spe_330 3 3 0.000106805
Solanum tuberosum ST4.03ch11 1 CH_stu_116 5 6 0.00000000256036
Trochodendron aralioides group5 1 CH_tar_400 3 3 0.000336279
Theobroma cacao Chromosome_1 1 CH_tca_311 3 3 0.00017782
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_19 6 6 0.000000000000782305
Tripterygium wilfordii NC_052233.1 1 CH_twi_238 3 3 0.000289979
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_118 4 4 0.000000159002
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_73 5 6 0.00000000146106
Zea mays 5 1 CH_zma_118 4 5 0.00000693473
Zea mays 9 1 CH_zma_54 6 12 0.00000000709517
Arabidopsis lyrata scaffold_6 2 CH_aly_84 5 6 0.0000000137345
Amaranthus hybridus AmaHy_arrow1_Scaffold_3 2 CH_amhyb_278 3 4 0.000938077
Amaranthus hybridus AmaHy_arrow1_Scaffold_5 2 CH_amhyb_41 5 9 0.0000001225
Aquilegia oxysepala CHR01 2 CH_aox_196 3 3 0.000119068
Arabidopsis thaliana Chr4 2 CH_ath_128 4 4 0.0000000905097
Arabidopsis thaliana Chr1 2 CH_ath_169 4 6 0.00000135537
Arabidopsis thaliana Chr2 2 CH_ath_284 3 3 0.0000865521
Brassica carinata ChrC03 2 CH_bca_1111 4 10 0.000805964
Brassica carinata ChrB05 2 CH_bca_333 5 8 0.000000543009
Brassica carinata ChrC08 2 CH_bca_590 4 6 0.0000580363
Brassica carinata Contig1551 2 CH_bca_591 4 6 0.0000580363
Brassica oleracea C2 2 CH_bol_289 4 9 0.000122863
Brassica rapa A05 2 CH_bra_373 3 3 0.000776441
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_127 4 6 0.00000745399
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_4 10 13 7.19845e-21
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_54 5 5 0.00000000101147
Camellia sinensis var. sinensis Chr3 2 CH_camsi_364 4 5 0.0000014861
Camellia sinensis var. sinensis Chr11 2 CH_camsi_365 4 5 0.0000014861
Cicer arietinum L. Ca_LG6_v3 2 CH_car_196 3 3 0.000157163
Citrus clementina scaffold_7 2 CH_ccl_70 6 9 0.0000000000750767
Carpinus fangiana Cfa04 2 CH_cfa_114 4 4 0.000000276144
Cardamine hirsuta Chr8 2 CH_chi_385 3 3 0.000464574
Carya illinoinensis Chr13 2 CH_cil_500 3 3 0.000405138
Corchorus olitorius AWUE01017966.1 2 CH_col_41 3 3 0.0000211202
Chenopodium quinoa C_Quinoa_Scaffold_3876 2 CH_cqu_133 5 8 0.0000000295039
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_19 10 15 1.36563e-20
Chenopodium quinoa C_Quinoa_Scaffold_3784 2 CH_cqu_293 4 8 0.0000228633
Chenopodium quinoa C_Quinoa_Scaffold_3820 2 CH_cqu_30 9 17 7.37489e-17
Capsella rubella scaffold_6 2 CH_cru_85 5 5 0.00000000279127
Daucus carota DCARv2_Chr1 2 CH_dca_336 3 3 0.000319685
Daucus carota DCARv2_Chr9 2 CH_dca_337 3 3 0.000319685
Durio zibethinus NW_019168470.1 2 CH_dzi_301 3 3 0.000404669
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_131 4 4 0.0000000677407
Eucalyptus grandis Chr06 2 CH_egr_869 3 4 0.000480941
Erythranthe guttata scaffold_6 2 CH_egut_96 5 5 0.000000000805515
Gossypium hirsutum A05 2 CH_ghi_147 6 9 0.000000000463557
Gossypium hirsutum D04 2 CH_ghi_52 8 9 1.98567e-16
Helianthus annuus HanXRQChr15 2 CH_han_140 7 16 0.000000000114011
Helianthus annuus HanXRQChr02 2 CH_han_240 5 8 0.00000013078
Helianthus annuus HanXRQChr14 2 CH_han_341 5 14 0.00000462628
Helianthus annuus HanXRQChr03 2 CH_han_669 3 3 0.000524453
Lupinus albus Lalb_Chr13 2 CH_lal_386 3 3 0.000628417
Lonicera japonica GWHAAZE00000004 2 CH_lonja_160 6 16 0.00000000929364
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_82 8 29 0.00000000002339
Magnolia biondii Chr09 2 CH_mbi_650 3 5 0.000827282
Magnolia biondii Chr14 2 CH_mbi_79 6 11 0.0000000000641714
Nelumbo nucifera chr6 2 CH_nnu_265 4 13 0.0000343536
Nelumbo nucifera chr1 2 CH_nnu_309 4 17 0.000113991
Oryza sativa ssp. japonica chr02 2 CH_osa_185 4 8 0.0000250548
Oryza sativa ssp. japonica chr02 2 CH_osa_57 6 11 0.000000000464231
Petunia axillaris Peaxi162Scf00025 2 CH_pax_224 3 3 0.000136801
Pisum sativum chr7LG7 2 CH_psa_16 10 31 4.6751e-16
Papaver somniferum NC_039363.1 2 CH_pso_277 4 5 0.00000038122
Papaver somniferum NC_039358.1 2 CH_pso_688 3 5 0.000805413
Papaver somniferum NC_039358.1 2 CH_pso_94 6 8 0.00000000000184134
Populus trichocarpa Chr10 2 CH_ptr_212 4 4 0.000000784028
Phaseolus vulgaris Chr11 2 CH_pvu_316 4 8 0.0000899197
Quercus lobata 11 2 CH_qlo_53 9 9 6.95214e-21
Quercus lobata 4 2 CH_qlo_84 9 14 1.38132e-17
Rhododendron simsii chr08 2 CH_rsi_152 5 6 0.0000000101434
Rhododendron simsii chr05 2 CH_rsi_31 9 10 3.17142e-19
Salix brachista GWHAAZH00000010 2 CH_sbr_317 3 3 0.000272561
Sequoiadendron giganteum chr1 2 CH_sgi_297 5 6 0.0000000000510142
Sequoiadendron giganteum chr9 2 CH_sgi_646 4 11 0.00000409963
Sequoiadendron giganteum chr4 2 CH_sgi_983 3 4 0.000070588
Solanum lycopersicum SL4.0ch11 2 CH_sly_106 5 5 0.000000000795614
Schrenkiella parvula ch1-1 2 CH_spa_120 4 4 0.00000159389
Solanum pennellii Spenn-ch11 2 CH_spe_178 4 5 0.000000688154
Solanum pennellii Spenn-ch06 2 CH_spe_330 3 3 0.000106805
Solanum tuberosum ST4.03ch11 2 CH_stu_116 5 6 0.00000000256036
Trochodendron aralioides group5 2 CH_tar_400 3 3 0.000336279
Theobroma cacao Chromosome_1 2 CH_tca_311 3 3 0.00017782
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_19 6 6 0.000000000000782305
Tripterygium wilfordii NC_052233.1 2 CH_twi_238 3 3 0.000289979
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_118 4 4 0.000000159002
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_73 5 6 0.00000000146106
Zea mays 5 2 CH_zma_118 4 5 0.00000693473
Zea mays 9 2 CH_zma_54 6 12 0.00000000709517

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001