Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (BRG)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB04 1 CH_bca_408 3 4 0.00000364595
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_334 2 2 0.000134617
Helianthus annuus HanXRQChr03 1 CH_han_672 2 2 0.000579643
Helianthus annuus HanXRQChr13 1 CH_han_673 2 2 0.000579643
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_546 2 3 0.000925157
Magnolia biondii Chr18 1 CH_mbi_313 2 2 0.0000485661
Brassica carinata ChrB04 2 CH_bca_408 3 4 0.00000364595
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_334 2 2 0.000134617
Helianthus annuus HanXRQChr03 2 CH_han_672 2 2 0.000579643
Helianthus annuus HanXRQChr13 2 CH_han_673 2 2 0.000579643
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_546 2 3 0.000925157
Magnolia biondii Chr18 2 CH_mbi_313 2 2 0.0000485661

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001