Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-III ligase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 1 | CH_acertr_224 | 3 | 5 | 0.0000213085 |
| Brassica carinata | ChrB05 | 1 | CH_bca_200 | 4 | 5 | 0.0000000284997 |
| Camellia sinensis var. sinensis | Chr13 | 1 | CH_camsi_595 | 3 | 8 | 0.000119948 |
| Capsicum annuum | PGAv.1.6.scaffold74 | 1 | CH_can_184 | 3 | 3 | 0.00000225218 |
| Corylus avellana | 10 | 1 | CH_cav_434 | 3 | 10 | 0.000480153 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_197 | 3 | 3 | 0.00000166552 |
| Ceratophyllum demersum | 4 | 1 | CH_cde_129 | 3 | 6 | 0.000104665 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_267 | 3 | 7 | 0.00013681 |
| Daucus carota | DCARv2_Chr6 | 1 | CH_dca_173 | 3 | 3 | 0.00000497887 |
| Durio zibethinus | NW_019167937.1 | 1 | CH_dzi_242 | 3 | 5 | 0.000144699 |
| Eucalyptus grandis | Chr01 | 1 | CH_egr_105 | 7 | 8 | 1.27606e-18 |
| Gossypium hirsutum | D09 | 1 | CH_ghi_419 | 3 | 3 | 0.0000184976 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_410 | 3 | 4 | 0.0000327261 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_169 | 4 | 5 | 0.0000000156045 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_289 | 3 | 3 | 0.0000061331 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_138 | 4 | 5 | 0.00000000986667 |
| Magnolia biondii | Chr17 | 1 | CH_mbi_175 | 4 | 12 | 0.000000231773 |
| Manihot esculenta | Chromosome18 | 1 | CH_mes_249 | 3 | 3 | 0.0000099056 |
| Medicago truncatula | chr1 | 1 | CH_mtr_217 | 4 | 6 | 0.00000000567823 |
| Nicotiana tabacum | Nitab4.5_0000157 | 1 | CH_nta_161 | 2 | 2 | 0.000658364 |
| Quercus lobata | 7 | 1 | CH_qlo_281 | 4 | 4 | 0.000000000982676 |
| Rhododendron simsii | chr03 | 1 | CH_rsi_45 | 7 | 13 | 1.11495e-16 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_42 | 6 | 6 | 4.25366e-16 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_45 | 5 | 5 | 0.000000000000251548 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_18 | 8 | 10 | 1.65707e-21 |
| Trochodendron aralioides | group18 | 1 | CH_tar_205 | 3 | 3 | 0.0000109433 |
| Trochodendron aralioides | group7 | 1 | CH_tar_206 | 3 | 3 | 0.0000109433 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 1 | CH_tpr_193 | 3 | 5 | 0.0000245672 |
| Vigna mungo | CM024079.1 | 1 | CH_vmu_107 | 4 | 9 | 0.000000311445 |
| Acer truncatum | chr8 | 2 | CH_acertr_224 | 3 | 5 | 0.0000213085 |
| Brassica carinata | ChrB05 | 2 | CH_bca_200 | 4 | 5 | 0.0000000284997 |
| Camellia sinensis var. sinensis | Chr13 | 2 | CH_camsi_595 | 3 | 8 | 0.000119948 |
| Capsicum annuum | PGAv.1.6.scaffold74 | 2 | CH_can_184 | 3 | 3 | 0.00000225218 |
| Corylus avellana | 10 | 2 | CH_cav_434 | 3 | 10 | 0.000480153 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_197 | 3 | 3 | 0.00000166552 |
| Ceratophyllum demersum | 4 | 2 | CH_cde_129 | 3 | 6 | 0.000104665 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_267 | 3 | 7 | 0.00013681 |
| Daucus carota | DCARv2_Chr6 | 2 | CH_dca_173 | 3 | 3 | 0.00000497887 |
| Durio zibethinus | NW_019167937.1 | 2 | CH_dzi_242 | 3 | 5 | 0.000144699 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_105 | 7 | 8 | 1.27606e-18 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_324 | 4 | 4 | 0.00000000233143 |
| Gossypium hirsutum | D09 | 2 | CH_ghi_419 | 3 | 3 | 0.0000184976 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_410 | 3 | 4 | 0.0000327261 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_169 | 4 | 5 | 0.0000000156045 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_289 | 3 | 3 | 0.0000061331 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_138 | 4 | 5 | 0.00000000986667 |
| Magnolia biondii | Chr17 | 2 | CH_mbi_175 | 4 | 12 | 0.000000231773 |
| Manihot esculenta | Chromosome18 | 2 | CH_mes_249 | 3 | 3 | 0.0000099056 |
| Nicotiana tabacum | Nitab4.5_0000157 | 2 | CH_nta_161 | 2 | 2 | 0.000658364 |
| Quercus lobata | 7 | 2 | CH_qlo_281 | 4 | 4 | 0.000000000982676 |
| Rhododendron simsii | chr03 | 2 | CH_rsi_45 | 7 | 13 | 1.11495e-16 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_42 | 6 | 6 | 4.25366e-16 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_45 | 5 | 5 | 0.000000000000251548 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_18 | 8 | 10 | 1.65707e-21 |
| Trochodendron aralioides | group18 | 2 | CH_tar_205 | 3 | 3 | 0.0000109433 |
| Trochodendron aralioides | group7 | 2 | CH_tar_206 | 3 | 3 | 0.0000109433 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 2 | CH_tpr_193 | 3 | 5 | 0.0000245672 |
| Vigna mungo | CM024079.1 | 2 | CH_vmu_107 | 4 | 9 | 0.000000311445 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |