Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC03 1 CH_bca_680 3 4 0.000125397
Chara braunii BFEA01000358 1 CH_cbr_40 3 11 0.00000511935
Carpinus fangiana Cfa01 1 CH_cfa_182 3 3 0.000019789
Carya illinoinensis Chr15 1 CH_cil_109 6 10 0.00000000000839454
Hydrangea macrophylla Hma1.2p1_0375F.1 1 CH_hma_29 4 4 0.00000000748597
Manihot esculenta Chromosome08 1 CH_mes_273 3 3 0.0000471845
Simmondsia chinensis GWHAASQ00000016 1 CH_sci_243 3 6 0.000499103
Sequoiadendron giganteum chr4 1 CH_sgi_974 3 4 0.0000520045
Brassica carinata ChrC03 2 CH_bca_680 3 4 0.000125397
Chara braunii BFEA01000358 2 CH_cbr_40 3 11 0.00000511935
Carpinus fangiana Cfa01 2 CH_cfa_182 3 3 0.000019789
Carya illinoinensis Chr15 2 CH_cil_109 6 10 0.00000000000839454
Hydrangea macrophylla Hma1.2p1_0375F.1 2 CH_hma_29 4 4 0.00000000748597
Manihot esculenta Chromosome08 2 CH_mes_273 3 3 0.0000471845
Simmondsia chinensis GWHAASQ00000016 2 CH_sci_243 3 6 0.000499103
Sequoiadendron giganteum chr4 2 CH_sgi_974 3 4 0.0000520045

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001