Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.HECT-type E3 ligase activities.monomeric E3 ubiquitin ligase (HECT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 1 CH_arhy_123 6 23 0.00000000000963355
Brassica carinata ChrC04 1 CH_bca_436 3 4 0.00000554829
Brassica napus A09 1 CH_bna_373 3 6 0.0000117658
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_187 3 3 0.0000010994
Manihot esculenta Chromosome10 1 CH_mes_277 3 7 0.0000559301
Medicago truncatula chr2 1 CH_mtr_185 4 5 0.00000000104127
Quercus lobata 5 1 CH_qlo_260 4 5 0.000000000433469
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_399 3 6 0.00000571923
Solanum tuberosum ST4.03ch12 1 CH_stu_246 3 3 0.00000179234
Solanum tuberosum ST4.03ch09 1 CH_stu_247 3 3 0.00000179234
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 2 CH_arhy_123 6 23 0.00000000000963355
Brassica carinata ChrC04 2 CH_bca_436 3 4 0.00000554829
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_187 3 3 0.0000010994
Eucalyptus grandis Chr04 2 CH_egr_497 3 3 0.000000431621
Manihot esculenta Chromosome10 2 CH_mes_277 3 7 0.0000559301
Quercus lobata 5 2 CH_qlo_260 4 5 0.000000000433469
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_399 3 6 0.00000571923
Solanum tuberosum ST4.03ch12 2 CH_stu_246 3 3 0.00000179234
Solanum tuberosum ST4.03ch09 2 CH_stu_247 3 3 0.00000179234

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001