Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-activating E1 protein (UBA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC02 1 CH_bca_301 3 4 0.000000328987
Chara braunii BFEA01000242 1 CH_cbr_130 2 3 0.000647303
Corchorus olitorius AWUE01014642.1 1 CH_col_68 2 2 0.000292099
Carica papaya supercontig_2 1 CH_cpa_200 2 2 0.0000950661
Durio zibethinus NW_019167882.1 1 CH_dzi_325 2 2 0.000463489
Durio zibethinus NW_019168159.1 1 CH_dzi_326 2 2 0.000463489
Gossypium hirsutum A03 1 CH_ghi_257 3 3 0.000000176463
Gossypium raimondii Chr13 1 CH_gra_408 2 2 0.000536107
Lupinus albus Lalb_Chr20 1 CH_lal_305 2 2 0.000314895
Populus trichocarpa Chr09 1 CH_ptr_369 2 2 0.0001734
Phaseolus vulgaris Chr06 1 CH_pvu_117 3 3 0.0000000323906
Salix brachista GWHAAZH00000016 1 CH_sbr_329 2 2 0.000378084
Salix brachista GWHAAZH00000009 1 CH_sbr_330 2 2 0.000378084
Theobroma cacao Chromosome_9 1 CH_tca_282 2 2 0.0000732386
Utricularia gibba unitig_0 1 CH_ugi_210 2 2 0.000220378
Vanilla planifolia CM028161.1 1 CH_vpl_317 2 2 0.000443328
Brassica carinata ChrC02 2 CH_bca_301 3 4 0.000000328987
Chara braunii BFEA01000242 2 CH_cbr_130 2 3 0.000647303
Corchorus olitorius AWUE01014642.1 2 CH_col_68 2 2 0.000292099
Carica papaya supercontig_2 2 CH_cpa_200 2 2 0.0000950661
Durio zibethinus NW_019167882.1 2 CH_dzi_325 2 2 0.000463489
Durio zibethinus NW_019168159.1 2 CH_dzi_326 2 2 0.000463489
Gossypium hirsutum A03 2 CH_ghi_257 3 3 0.000000176463
Gossypium raimondii Chr13 2 CH_gra_408 2 2 0.000536107
Lupinus albus Lalb_Chr20 2 CH_lal_305 2 2 0.000314895
Populus trichocarpa Chr09 2 CH_ptr_369 2 2 0.0001734
Phaseolus vulgaris Chr06 2 CH_pvu_117 3 3 0.0000000323906
Salix brachista GWHAAZH00000016 2 CH_sbr_329 2 2 0.000378084
Salix brachista GWHAAZH00000009 2 CH_sbr_330 2 2 0.000378084
Theobroma cacao Chromosome_9 2 CH_tca_282 2 2 0.0000732386
Utricularia gibba unitig_0 2 CH_ugi_210 2 2 0.000220378
Vanilla planifolia CM028161.1 2 CH_vpl_317 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001