Functional clusters
Information
- Type MapMan
- Description Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-fold protein (UBQ)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 1 | CH_acertr_151 | 3 | 3 | 0.00000041748 |
| Acer truncatum | chr2 | 1 | CH_acertr_43 | 4 | 4 | 0.000000000073583 |
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_390 | 4 | 65 | 0.000574192 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_156 | 4 | 7 | 0.000000000708507 |
| Chara braunii | BFEA01000197 | 1 | CH_cbr_120 | 2 | 4 | 0.00043153 |
| Coffea canephora | chr2 | 1 | CH_ccan_148 | 3 | 42 | 0.0000101478 |
| Citrus clementina | scaffold_6 | 1 | CH_ccl_103 | 4 | 6 | 0.00000000312892 |
| Citrus clementina | scaffold_1 | 1 | CH_ccl_242 | 3 | 6 | 0.0000169466 |
| Carica papaya | supercontig_97 | 1 | CH_cpa_301 | 2 | 2 | 0.000285198 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 1 | CH_eca_3 | 11 | 38 | 1.21004e-28 |
| Gossypium hirsutum | A04 | 1 | CH_ghi_412 | 3 | 5 | 0.0000121875 |
| Medicago truncatula | chr4 | 1 | CH_mtr_566 | 3 | 11 | 0.0000918011 |
| Prunus persica | Pp04 | 1 | CH_ppe_301 | 3 | 11 | 0.0000275191 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_119 | 4 | 26 | 0.000000222391 |
| Phaseolus vulgaris | Chr03 | 1 | CH_pvu_48 | 5 | 7 | 0.000000000000096386 |
| Quercus lobata | 7 | 1 | CH_qlo_588 | 3 | 6 | 0.0000131876 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_539 | 5 | 46 | 0.000000153593 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_614 | 3 | 3 | 0.00000161972 |
| Vanilla planifolia | CM028153.1 | 1 | CH_vpl_366 | 2 | 2 | 0.00073888 |
| Acer truncatum | chr8 | 2 | CH_acertr_151 | 3 | 3 | 0.00000041748 |
| Acer truncatum | chr2 | 2 | CH_acertr_43 | 4 | 4 | 0.000000000073583 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_390 | 4 | 65 | 0.000574192 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_156 | 4 | 7 | 0.000000000708507 |
| Chara braunii | BFEA01000197 | 2 | CH_cbr_120 | 2 | 4 | 0.00043153 |
| Coffea canephora | chr2 | 2 | CH_ccan_148 | 3 | 42 | 0.0000101478 |
| Citrus clementina | scaffold_6 | 2 | CH_ccl_103 | 4 | 6 | 0.00000000312892 |
| Citrus clementina | scaffold_1 | 2 | CH_ccl_242 | 3 | 6 | 0.0000169466 |
| Carica papaya | supercontig_97 | 2 | CH_cpa_301 | 2 | 2 | 0.000285198 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 2 | CH_eca_3 | 11 | 38 | 1.21004e-28 |
| Gossypium hirsutum | A04 | 2 | CH_ghi_412 | 3 | 5 | 0.0000121875 |
| Prunus persica | Pp04 | 2 | CH_ppe_301 | 3 | 11 | 0.0000275191 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_119 | 4 | 26 | 0.000000222391 |
| Phaseolus vulgaris | Chr03 | 2 | CH_pvu_48 | 5 | 7 | 0.000000000000096386 |
| Quercus lobata | 7 | 2 | CH_qlo_588 | 3 | 6 | 0.0000131876 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_539 | 5 | 46 | 0.000000153593 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_614 | 3 | 3 | 0.00000161972 |
| Vanilla planifolia | CM028153.1 | 2 | CH_vpl_366 | 2 | 2 | 0.00073888 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |