Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.ubiquitin-conjugating component GID3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 4 1 CH_cav_341 2 2 0.000230008
Erythranthe guttata scaffold_1 1 CH_egut_328 3 17 0.000107985
Helianthus annuus HanXRQChr13 1 CH_han_675 2 2 0.000579643
Lupinus albus Lalb_Chr17 1 CH_lal_103 3 4 0.000000578379
Pisum sativum chr7LG7 1 CH_psa_427 2 3 0.000938886
Rhododendron simsii chr10 1 CH_rsi_522 2 3 0.000580745
Solanum lycopersicum SL4.0ch10 1 CH_sly_229 3 7 0.00000361597
Solanum pennellii Spenn-ch10 1 CH_spe_247 3 15 0.0000269821
Corylus avellana 4 2 CH_cav_341 2 2 0.000230008
Eucalyptus grandis Chr11 2 CH_egr_747 2 3 0.000175577
Erythranthe guttata scaffold_1 2 CH_egut_328 3 17 0.000107985
Helianthus annuus HanXRQChr13 2 CH_han_675 2 2 0.000579643
Lupinus albus Lalb_Chr17 2 CH_lal_103 3 4 0.000000578379
Pisum sativum chr7LG7 2 CH_psa_427 2 3 0.000938886
Rhododendron simsii chr10 2 CH_rsi_522 2 3 0.000580745
Solanum lycopersicum SL4.0ch10 2 CH_sly_229 3 7 0.00000361597
Solanum pennellii Spenn-ch10 2 CH_spe_247 3 15 0.0000269821

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001