Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.N-terminal modification.arginyl-tRNA-protein transferase (ATE)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 1 CH_arhy_461 2 2 0.000089815
Corylus avellana 11 1 CH_cav_232 2 2 0.0000766695
Carica papaya supercontig_19 1 CH_cpa_31 3 3 0.000000013557
Eucalyptus grandis Chr10 1 CH_egr_129 5 5 8.80189e-17
Erythranthe guttata scaffold_6 1 CH_egut_276 2 2 0.0000728147
Helianthus annuus HanXRQChr14 1 CH_han_494 2 2 0.000115929
Papaver somniferum NC_039366.1 1 CH_pso_428 2 2 0.0000675699
Sequoiadendron giganteum chr9 1 CH_sgi_382 3 3 0.00000000355983
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 2 CH_arhy_461 2 2 0.000089815
Corylus avellana 11 2 CH_cav_232 2 2 0.0000766695
Carica papaya supercontig_19 2 CH_cpa_31 3 3 0.000000013557
Eucalyptus grandis Chr10 2 CH_egr_129 5 5 8.80189e-17
Erythranthe guttata scaffold_6 2 CH_egut_276 2 2 0.0000728147
Helianthus annuus HanXRQChr14 2 CH_han_494 2 2 0.000115929
Papaver somniferum NC_039366.1 2 CH_pso_428 2 2 0.0000675699
Sequoiadendron giganteum chr9 2 CH_sgi_382 3 3 0.00000000355983

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001