Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Ac/N-degron pathway.Doa10 E3 ubiquitin ligase complex.E3 ubiquitin ligase component Doa10

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_7 1 CH_aly_354 2 2 0.000396027
Brassica carinata ChrC09 1 CH_bca_974 2 2 0.00059854
Brassica carinata Contig1304 1 CH_bca_975 2 2 0.00059854
Brassica napus C01 1 CH_bna_254 3 3 0.000000588516
Capsicum annuum PGAv.1.6.scaffold1231 1 CH_can_314 2 3 0.000247821
Corylus avellana 9 1 CH_cav_387 2 4 0.000459982
Ceratophyllum demersum 1 1 CH_cde_155 2 2 0.000236939
Cardamine hirsuta Chr3 1 CH_chi_181 3 8 0.0000080222
Capsella rubella scaffold_7 1 CH_cru_358 2 2 0.000438693
Davidia involucrata GWHABJS00000002 1 CH_din_320 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_424 2 3 0.000403835
Physcomitrium patens Chr09 1 CH_ppa_281 2 2 0.000612726
Papaver somniferum NC_039363.1 1 CH_pso_165 4 7 0.00000000581019
Papaver somniferum NC_039363.1 1 CH_pso_332 3 4 0.00000346942
Papaver somniferum NC_039358.1 1 CH_pso_78 5 6 0.000000000000179534
Simmondsia chinensis GWHAASQ00000014 1 CH_sci_38 3 3 0.0000000108744
Sequoiadendron giganteum chr1 1 CH_sgi_1064 2 2 0.000146145
Trochodendron aralioides group11 1 CH_tar_327 2 2 0.00018011
Utricularia gibba unitig_0 1 CH_ugi_20 3 3 0.0000000323787
Arabidopsis lyrata scaffold_7 2 CH_aly_354 2 2 0.000396027
Brassica carinata ChrC09 2 CH_bca_974 2 2 0.00059854
Brassica carinata Contig1304 2 CH_bca_975 2 2 0.00059854
Capsicum annuum PGAv.1.6.scaffold1231 2 CH_can_314 2 3 0.000247821
Corylus avellana 9 2 CH_cav_387 2 4 0.000459982
Ceratophyllum demersum 1 2 CH_cde_155 2 2 0.000236939
Cardamine hirsuta Chr3 2 CH_chi_181 3 8 0.0000080222
Capsella rubella scaffold_7 2 CH_cru_358 2 2 0.000438693
Davidia involucrata GWHABJS00000002 2 CH_din_320 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_424 2 3 0.000403835
Gossypium hirsutum A03 2 CH_ghi_603 2 2 0.000267016
Physcomitrium patens Chr09 2 CH_ppa_281 2 2 0.000612726
Papaver somniferum NC_039363.1 2 CH_pso_165 4 7 0.00000000581019
Papaver somniferum NC_039363.1 2 CH_pso_332 3 4 0.00000346942
Papaver somniferum NC_039358.1 2 CH_pso_78 5 6 0.000000000000179534
Simmondsia chinensis GWHAASQ00000014 2 CH_sci_38 3 3 0.0000000108744
Sequoiadendron giganteum chr1 2 CH_sgi_1064 2 2 0.000146145
Trochodendron aralioides group11 2 CH_tar_327 2 2 0.00018011
Utricularia gibba unitig_0 2 CH_ugi_20 3 3 0.0000000323787

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001