Functional clusters

Information

  • Type MapMan
  • Description Protein homeostasis.protein quality control.smallHsp holdase chaperone activities.class-C-I protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 1 CH_acertr_183 3 4 0.0000025044
Acer truncatum chr3 1 CH_acertr_70 4 6 0.00000000198604
Arabidopsis lyrata scaffold_5 1 CH_aly_207 3 9 0.0000307122
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 1 CH_amhyb_57 3 3 0.000000892804
Amborella trichopoda AmTr_v1.0_scaffold00165 1 CH_atr_132 4 32 0.00000376869
Brassica oleracea C4 1 CH_bol_410 2 2 0.000686409
Brassica rapa A05 1 CH_bra_382 2 2 0.000901558
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_126 3 6 0.00000719392
Camellia sinensis var. sinensis Chr1 1 CH_camsi_35 8 25 6.33357e-18
Camellia sinensis var. sinensis Chr11 1 CH_camsi_67 6 12 0.0000000000000781397
Cannabis sativa NC_044375.1 1 CH_cansat_34 5 5 0.0000000000000644322
Capsicum annuum PGAv.1.6.scaffold394 1 CH_can_149 3 3 0.000000358301
Capsicum annuum PGAv.1.6.scaffold606 1 CH_can_63 4 4 0.0000000000592037
Cicer arietinum L. Ca_LG6_v3 1 CH_car_52 3 3 0.000000318032
Corylus avellana 11 1 CH_cav_77 4 8 0.0000000119172
Coffea canephora chr2 1 CH_ccan_33 4 12 0.00000000000401483
Citrus clementina scaffold_8 1 CH_ccl_55 5 7 0.00000000000329404
Ceratophyllum demersum 1 1 CH_cde_279 2 2 0.000789796
Carpinus fangiana Cfa01 1 CH_cfa_271 3 8 0.000218813
Carpinus fangiana Cfa04 1 CH_cfa_8 10 27 1.46856e-23
Carya illinoinensis Chr13 1 CH_cil_13 11 15 1.41796e-30
Corchorus olitorius AWUE01016544.1 1 CH_col_10 5 8 0.0000000000183464
Carica papaya supercontig_81 1 CH_cpa_2 9 21 6.11019e-22
Chenopodium quinoa C_Quinoa_Scaffold_1995 1 CH_cqu_297 4 51 0.0000261266
Cucumis sativus L. chr5 1 CH_csa_25 6 11 0.00000000000000353808
Daucus carota DCARv2_Chr3 1 CH_dca_34 5 9 0.00000000000196932
Davidia involucrata GWHABJS00000009 1 CH_din_286 3 7 0.000107025
Davidia involucrata GWHABJS00000701 1 CH_din_79 4 5 0.00000000574048
Davidia involucrata GWHABJS00000701 1 CH_din_80 4 5 0.00000000574048
Durio zibethinus NW_019168159.1 1 CH_dzi_151 3 3 0.00000367354
Durio zibethinus NW_019167882.1 1 CH_dzi_20 7 22 0.0000000000000147741
Durio zibethinus NW_019167871.1 1 CH_dzi_47 5 10 0.000000000135034
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_47 4 4 0.00000000000948749
Eucalyptus grandis Chr10 1 CH_egr_5 16 26 1.68446e-46
Erythranthe guttata scaffold_6 1 CH_egut_4 15 57 3.19749e-33
Fragaria x ananassa Fvb7-2 1 CH_fan_361 3 10 0.0000596689
Gossypium hirsutum A07 1 CH_ghi_370 3 3 0.0000035036
Glycine max Gm08 1 CH_gma_273 3 4 0.00000985156
Glycine max Gm07 1 CH_gma_58 5 7 0.00000000000506593
Glycine max Gm13 1 CH_gma_71 5 9 0.00000000003038
Gossypium raimondii Chr01 1 CH_gra_449 4 77 0.000837712
Helianthus annuus HanXRQChr01 1 CH_han_111 5 11 0.0000000000231801
Lupinus albus Lalb_Chr15 1 CH_lal_415 2 2 0.000787236
Lonicera japonica GWHAAZE00000002 1 CH_lonja_106 5 9 0.0000000000530403
Lonicera japonica GWHAAZE00000007 1 CH_lonja_129 4 4 0.00000000117284
Lonicera japonica GWHAAZE00000001 1 CH_lonja_264 4 17 0.00000277986
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_131 4 7 0.00000000470351
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_251 3 4 0.00000261521
Magnolia biondii Chr06 1 CH_mbi_293 3 9 0.0000249447
Magnolia biondii Chr05 1 CH_mbi_38 6 18 0.00000000000000631537
Malus domestica Chr07 1 CH_mdo_249 3 5 0.000000754857
Malus domestica Chr11 1 CH_mdo_509 3 23 0.000133503
Manihot esculenta Chromosome02 1 CH_mes_101 5 8 0.000000000247859
Manihot esculenta Chromosome14 1 CH_mes_14 10 11 1.80603e-27
Manihot esculenta Chromosome10 1 CH_mes_434 3 7 0.000395414
Medicago truncatula chr4 1 CH_mtr_413 3 7 0.00000496114
Nelumbo nucifera chr7 1 CH_nnu_64 4 7 0.00000000182716
Nicotiana tabacum Nitab4.5_0000278 1 CH_nta_16 4 5 0.000000000693576
Oryza sativa ssp. japonica chr01 1 CH_osa_109 3 3 0.000000146433
Oryza sativa ssp. japonica chr03 1 CH_osa_55 4 6 0.000000000231975
Petunia axillaris Peaxi162Scf00928 1 CH_pax_96 3 3 0.00000025988
Punica granatum NC_045132.1 1 CH_pgr_8 8 9 1.88061e-23
Prunus persica Pp06 1 CH_ppe_43 6 7 1.01892e-17
Pisum sativum chr7LG7 1 CH_psa_134 4 27 0.000000521838
Pisum sativum chr2LG1 1 CH_psa_151 3 5 0.00000228516
Papaver somniferum NC_039368.1 1 CH_pso_148 5 19 0.00000000147214
Populus trichocarpa Chr04 1 CH_ptr_264 3 4 0.0000112221
Phaseolus vulgaris Chr08 1 CH_pvu_187 3 3 0.00000133611
Phaseolus vulgaris Chr02 1 CH_pvu_50 5 5 0.000000000000100996
Quercus lobata 8 1 CH_qlo_265 5 8 0.000000000506229
Quercus lobata 11 1 CH_qlo_66 8 11 4.00465e-19
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_336 3 5 0.000000834234
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_403 3 9 0.00000700533
Salvia bowleyana GWHASIU00000002 1 CH_sbo_14 9 20 2.12211e-22
Salvia bowleyana GWHASIU00000002 1 CH_sbo_16 8 13 7.155e-21
Salix brachista GWHAAZH00000019 1 CH_sbr_58 5 8 0.0000000000566855
Simmondsia chinensis GWHAASQ00000010 1 CH_sci_9 6 8 1.97374e-17
Sequoiadendron giganteum chr5 1 CH_sgi_42 11 40 9.23894e-27
Solanum lycopersicum SL4.0ch06 1 CH_sly_81 4 5 0.0000000000151656
Solanum pennellii Spenn-ch06 1 CH_spe_36 5 6 0.0000000000000221932
Solanum tuberosum ST4.03ch09 1 CH_stu_110 4 5 0.000000000999099
Solanum tuberosum ST4.03ch06 1 CH_stu_64 5 6 0.000000000000245778
Trochodendron aralioides group2 1 CH_tar_26 5 7 0.000000000000257799
Theobroma cacao Chromosome_9 1 CH_tca_31 6 10 0.00000000000000209025
Trifolium pratense Tp57577_TGAC_v2_scaf_259 1 CH_tpr_63 4 10 0.00000000955795
Tripterygium wilfordii NC_052233.1 1 CH_twi_67 4 7 0.00000000381931
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_10 6 6 4.36695e-18
Vigna mungo CM024069.1 1 CH_vmu_398 2 2 0.000646141
Vigna mungo CM024073.1 1 CH_vmu_399 2 2 0.000646141
Zea mays 1 1 CH_zma_108 3 6 0.00000274436
Acer truncatum chr2 2 CH_acertr_183 3 4 0.0000025044
Acer truncatum chr3 2 CH_acertr_70 4 6 0.00000000198604
Arabidopsis lyrata scaffold_5 2 CH_aly_207 3 9 0.0000307122
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 2 CH_amhyb_57 3 3 0.000000892804
Amborella trichopoda AmTr_v1.0_scaffold00165 2 CH_atr_132 4 32 0.00000376869
Brassica oleracea C4 2 CH_bol_410 2 2 0.000686409
Brassica rapa A05 2 CH_bra_382 2 2 0.000901558
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_126 3 6 0.00000719392
Camellia sinensis var. sinensis Chr1 2 CH_camsi_35 8 25 6.33357e-18
Camellia sinensis var. sinensis Chr11 2 CH_camsi_67 6 12 0.0000000000000781397
Cannabis sativa NC_044375.1 2 CH_cansat_34 5 5 0.0000000000000644322
Capsicum annuum PGAv.1.6.scaffold394 2 CH_can_149 3 3 0.000000358301
Capsicum annuum PGAv.1.6.scaffold606 2 CH_can_63 4 4 0.0000000000592037
Cicer arietinum L. Ca_LG6_v3 2 CH_car_52 3 3 0.000000318032
Corylus avellana 11 2 CH_cav_77 4 8 0.0000000119172
Coffea canephora chr2 2 CH_ccan_33 4 12 0.00000000000401483
Citrus clementina scaffold_8 2 CH_ccl_55 5 7 0.00000000000329404
Ceratophyllum demersum 1 2 CH_cde_279 2 2 0.000789796
Carpinus fangiana Cfa01 2 CH_cfa_271 3 8 0.000218813
Carpinus fangiana Cfa04 2 CH_cfa_8 10 27 1.46856e-23
Carya illinoinensis Chr13 2 CH_cil_13 11 15 1.41796e-30
Corchorus olitorius AWUE01016544.1 2 CH_col_10 5 8 0.0000000000183464
Carica papaya supercontig_81 2 CH_cpa_2 9 21 6.11019e-22
Chenopodium quinoa C_Quinoa_Scaffold_1995 2 CH_cqu_297 4 51 0.0000261266
Cucumis sativus L. chr5 2 CH_csa_25 6 11 0.00000000000000353808
Daucus carota DCARv2_Chr3 2 CH_dca_34 5 9 0.00000000000196932
Davidia involucrata GWHABJS00000009 2 CH_din_286 3 7 0.000107025
Davidia involucrata GWHABJS00000701 2 CH_din_79 4 5 0.00000000574048
Davidia involucrata GWHABJS00000701 2 CH_din_80 4 5 0.00000000574048
Durio zibethinus NW_019168159.1 2 CH_dzi_151 3 3 0.00000367354
Durio zibethinus NW_019167882.1 2 CH_dzi_20 7 22 0.0000000000000147741
Durio zibethinus NW_019167871.1 2 CH_dzi_47 5 10 0.000000000135034
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_47 4 4 0.00000000000948749
Eucalyptus grandis Chr10 2 CH_egr_5 16 26 1.68446e-46
Erythranthe guttata scaffold_6 2 CH_egut_4 15 57 3.19749e-33
Fragaria x ananassa Fvb7-2 2 CH_fan_361 3 10 0.0000596689
Gossypium hirsutum A07 2 CH_ghi_370 3 3 0.0000035036
Glycine max Gm08 2 CH_gma_273 3 4 0.00000985156
Glycine max Gm07 2 CH_gma_58 5 7 0.00000000000506593
Glycine max Gm13 2 CH_gma_71 5 9 0.00000000003038
Gossypium raimondii Chr01 2 CH_gra_449 4 77 0.000837712
Helianthus annuus HanXRQChr01 2 CH_han_111 5 11 0.0000000000231801
Lupinus albus Lalb_Chr15 2 CH_lal_415 2 2 0.000787236
Lotus japonicus Contig00141 2 CH_lja_414 2 2 0.000715077
Lonicera japonica GWHAAZE00000002 2 CH_lonja_106 5 9 0.0000000000530403
Lonicera japonica GWHAAZE00000007 2 CH_lonja_129 4 4 0.00000000117284
Lonicera japonica GWHAAZE00000001 2 CH_lonja_264 4 17 0.00000277986
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_131 4 7 0.00000000470351
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_251 3 4 0.00000261521
Magnolia biondii Chr06 2 CH_mbi_293 3 9 0.0000249447
Magnolia biondii Chr05 2 CH_mbi_38 6 18 0.00000000000000631537
Malus domestica Chr07 2 CH_mdo_249 3 5 0.000000754857
Malus domestica Chr11 2 CH_mdo_509 3 23 0.000133503
Manihot esculenta Chromosome02 2 CH_mes_101 5 8 0.000000000247859
Manihot esculenta Chromosome14 2 CH_mes_14 10 11 1.80603e-27
Manihot esculenta Chromosome10 2 CH_mes_434 3 7 0.000395414
Nelumbo nucifera chr7 2 CH_nnu_64 4 7 0.00000000182716
Nicotiana tabacum Nitab4.5_0000278 2 CH_nta_16 4 5 0.000000000693576
Oryza sativa ssp. japonica chr01 2 CH_osa_109 3 3 0.000000146433
Oryza sativa ssp. japonica chr03 2 CH_osa_55 4 6 0.000000000231975
Petunia axillaris Peaxi162Scf00928 2 CH_pax_96 3 3 0.00000025988
Punica granatum NC_045132.1 2 CH_pgr_8 8 9 1.88061e-23
Prunus persica Pp06 2 CH_ppe_43 6 7 1.01892e-17
Pisum sativum chr7LG7 2 CH_psa_134 4 27 0.000000521838
Pisum sativum chr2LG1 2 CH_psa_151 3 5 0.00000228516
Papaver somniferum NC_039368.1 2 CH_pso_148 5 19 0.00000000147214
Populus trichocarpa Chr04 2 CH_ptr_264 3 4 0.0000112221
Phaseolus vulgaris Chr08 2 CH_pvu_187 3 3 0.00000133611
Phaseolus vulgaris Chr02 2 CH_pvu_50 5 5 0.000000000000100996
Quercus lobata 8 2 CH_qlo_265 5 8 0.000000000506229
Quercus lobata 11 2 CH_qlo_66 8 11 4.00465e-19
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_336 3 5 0.000000834234
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_403 3 9 0.00000700533
Salvia bowleyana GWHASIU00000002 2 CH_sbo_14 9 20 2.12211e-22
Salvia bowleyana GWHASIU00000002 2 CH_sbo_16 8 13 7.155e-21
Salix brachista GWHAAZH00000019 2 CH_sbr_58 5 8 0.0000000000566855
Simmondsia chinensis GWHAASQ00000010 2 CH_sci_9 6 8 1.97374e-17
Sequoiadendron giganteum chr5 2 CH_sgi_42 11 40 9.23894e-27
Solanum lycopersicum SL4.0ch06 2 CH_sly_81 4 5 0.0000000000151656
Solanum pennellii Spenn-ch06 2 CH_spe_36 5 6 0.0000000000000221932
Solanum tuberosum ST4.03ch09 2 CH_stu_110 4 5 0.000000000999099
Solanum tuberosum ST4.03ch06 2 CH_stu_64 5 6 0.000000000000245778
Trochodendron aralioides group2 2 CH_tar_26 5 7 0.000000000000257799
Theobroma cacao Chromosome_9 2 CH_tca_31 6 10 0.00000000000000209025
Trifolium pratense Tp57577_TGAC_v2_scaf_259 2 CH_tpr_63 4 10 0.00000000955795
Tripterygium wilfordii NC_052233.1 2 CH_twi_67 4 7 0.00000000381931
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_10 6 6 4.36695e-18
Vigna mungo CM024069.1 2 CH_vmu_398 2 2 0.000646141
Vigna mungo CM024073.1 2 CH_vmu_399 2 2 0.000646141
Zea mays 1 2 CH_zma_108 3 6 0.00000274436

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001